Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12l10f
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 238 2e-63
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 236 8e-63
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 233 6e-62
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 223 1e-58
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 200 8e-52
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 142 1e-34
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 142 1e-34
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 141 4e-34
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 141 4e-34
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 136 9e-33
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 116 1e-26
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 116 1e-26
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 112 2e-25
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 112 2e-25
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 107 6e-24
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 105 2e-23
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 103 8e-23
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 103 1e-22
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 102 2e-22
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 101 4e-22
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 101 4e-22
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 101 4e-22
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 101 5e-22
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 100 7e-22
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 100 7e-22
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 99 1e-21
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 99 3e-21
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 97 1e-20
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 97 1e-20
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 97 1e-20
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 96 2e-20
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 95 5e-20
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 94 8e-20
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 94 8e-20
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 93 1e-19
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 93 1e-19
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 93 1e-19
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 88 5e-18
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 87 9e-18
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 87 9e-18
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 86 2e-17
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 85 4e-17
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 85 5e-17
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 84 7e-17
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 83 1e-16
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 83 1e-16
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 79 2e-15
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 79 2e-15
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 79 2e-15
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 79 2e-15
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 78 4e-15
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 78 4e-15
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 78 6e-15
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 77 8e-15
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 77 8e-15
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 75 5e-14
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 73 2e-13
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 71 5e-13
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 70 1e-12
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 69 2e-12
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 61 7e-10
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 59 3e-09
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 54 8e-08
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 42 3e-04
At2g28600.1 68415.m03476 expressed protein 33 0.16
At3g10020.1 68416.m01202 expressed protein 33 0.21
At2g04620.1 68415.m00470 cation efflux family protein potential ... 33 0.21
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 32 0.37
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 30 1.1
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 2.6
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ... 29 3.5
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 28 4.6
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu... 28 4.6
At2g24020.1 68415.m02869 expressed protein contains Pfam domain ... 28 4.6
At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transfera... 28 6.1
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 28 6.1
At2g43110.1 68415.m05352 expressed protein 28 6.1
At1g76010.1 68414.m08825 expressed protein 28 6.1
At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP ... 27 8.0
At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP ... 27 8.0
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 238 bits (583), Expect = 2e-63
Identities = 113/161 (70%), Positives = 136/161 (84%)
Frame = +1
Query: 148 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 327
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTA
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 328 TFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 507
TF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K HAC+GGT+VRED
Sbjct: 92 TFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 151
Query: 508 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
R L++GVHVVVGTPGRV+DM+ R++L A+ IK+FVLDEADE
Sbjct: 152 RILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADE 192
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 236 bits (578), Expect = 8e-63
Identities = 111/164 (67%), Positives = 138/164 (84%)
Frame = +1
Query: 139 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTG 318
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTG
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTG 90
Query: 319 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 498
KTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K AC+GGT+VR
Sbjct: 91 KTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVR 150
Query: 499 EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
ED R L+SGVHVVVGTPGRV+D++ R++L A+ IK+FVLDEADE
Sbjct: 151 EDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADE 194
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 233 bits (571), Expect = 6e-62
Identities = 110/161 (68%), Positives = 135/161 (83%)
Frame = +1
Query: 148 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 327
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTA
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 328 TFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 507
TF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ ALGD+ K HAC+GGT+VRED
Sbjct: 92 TFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQ 151
Query: 508 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
R L++GVHVVVGTPGRV+DM+ R++L + IK+FVLDEADE
Sbjct: 152 RILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADE 192
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 223 bits (544), Expect = 1e-58
Identities = 104/161 (64%), Positives = 129/161 (80%)
Frame = +1
Query: 148 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 327
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP +QGRDVIAQAQSGTGKT+
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTS 87
Query: 328 TFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 507
++S+ Q +DTS RE QALIL+PTRELA Q +K + A+G H N + HACIGG +V EDI
Sbjct: 88 MIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDI 147
Query: 508 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
R+LE GVHVV GTPGRV DMI RR+L IKL +LDE+DE
Sbjct: 148 RKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDE 188
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 200 bits (487), Expect = 8e-52
Identities = 88/155 (56%), Positives = 122/155 (78%)
Frame = +1
Query: 166 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 345
+++FDDM + +++LRG+Y YG++KPS IQQRA++P ++GRDVIAQAQSGTGKT+ +IS+
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80
Query: 346 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 525
Q ++ S R+ Q L+L+P+RELA Q +K + A+G H N + HACIGG ++ EDI++LE G
Sbjct: 81 CQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERG 140
Query: 526 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
VH V GTPGRVYDMI R +L +KL VLDE+DE
Sbjct: 141 VHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDE 175
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 142 bits (345), Expect = 1e-34
Identities = 69/152 (45%), Positives = 99/152 (65%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 354
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 355 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 534
ID QA+I+ PTRELA Q +V LG HL + GGT++++DI +L VH+
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHL 252
Query: 535 VVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
+VGTPGR+ D+ + + V+DEAD+
Sbjct: 253 LVGTPGRILDLTKKGVCVLKDCSVLVMDEADK 284
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 142 bits (345), Expect = 1e-34
Identities = 69/152 (45%), Positives = 99/152 (65%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 354
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 355 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 534
ID QA+I+ PTRELA Q +V LG HL + GGT++++DI +L VH+
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHL 252
Query: 535 VVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
+VGTPGR+ D+ + + V+DEAD+
Sbjct: 253 LVGTPGRILDLTKKGVCVLKDCSVLVMDEADK 284
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 141 bits (341), Expect = 4e-34
Identities = 68/152 (44%), Positives = 99/152 (65%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 354
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 355 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 534
ID + QA+IL PTRELA Q +V L +LN + GGT++R+DI +L VH+
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
Query: 535 VVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
+VGTPGR+ D+ + + V+DEAD+
Sbjct: 246 LVGTPGRILDLTKKGVCVLKDCAMLVMDEADK 277
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 141 bits (341), Expect = 4e-34
Identities = 68/152 (44%), Positives = 99/152 (65%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 354
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 355 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 534
ID + QA+IL PTRELA Q +V L +LN + GGT++R+DI +L VH+
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
Query: 535 VVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
+VGTPGR+ D+ + + V+DEAD+
Sbjct: 246 LVGTPGRILDLTKKGVCVLKDCAMLVMDEADK 277
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 136 bits (330), Expect = 9e-33
Identities = 68/152 (44%), Positives = 96/152 (63%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 354
F+D LK +LLRGIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I L++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 355 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 534
ID QA+IL PTRELA Q +V L +L + GGT++R+DI +L VH+
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHL 275
Query: 535 VVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
+VGTPGR+ D+ + + V+DEAD+
Sbjct: 276 LVGTPGRILDLAKKGVCVLKDCAMLVMDEADK 307
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 116 bits (280), Expect = 1e-26
Identities = 68/155 (43%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 354
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 355 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVR--EDIRQLESG 525
I+ S + AL+L TRELA QI + +L + K GG N++ +D+ + E
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC- 166
Query: 526 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
H+VVGTPGRV + + L ++ F+LDE D+
Sbjct: 167 PHIVVGTPGRVLALAREKDLSLKNVRHFILDECDK 201
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 116 bits (280), Expect = 1e-26
Identities = 68/155 (43%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 354
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 355 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVR--EDIRQLESG 525
I+ S + AL+L TRELA QI + +L + K GG N++ +D+ + E
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC- 166
Query: 526 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
H+VVGTPGRV + + L ++ F+LDE D+
Sbjct: 167 PHIVVGTPGRVLALAREKDLSLKNVRHFILDECDK 201
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 112 bits (270), Expect = 2e-25
Identities = 61/156 (39%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 181 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI- 357
++ + E+++ + + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 358 -----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 522
R L+LAPTRELA+Q++K L+ C GGT + + +RQL+
Sbjct: 168 KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQLDY 225
Query: 523 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
GV V VGTPGRV D++ R AL+ + ++ VLDEAD+
Sbjct: 226 GVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQ 261
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 112 bits (270), Expect = 2e-25
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 181 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI- 357
D+ + E+++ + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 358 -----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 522
+ Q L+LAPTRELA+Q++K L+ C GGT + + +R+L
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRELNY 237
Query: 523 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
G+ V VGTPGR+ D++ R AL+ + ++ VLDEAD+
Sbjct: 238 GIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQ 273
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 107 bits (257), Expect = 6e-24
Identities = 62/175 (35%), Positives = 99/175 (56%), Gaps = 13/175 (7%)
Frame = +1
Query: 157 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 336
++VV+TF ++ ++EEL++ G++ PS IQ A+ ++G+DVI AQ+G+GKT F+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFA 64
Query: 337 ISILQQIDTSIRECQ------------ALILAPTRELAQQIQKVVIALGDHLNAKCHACI 480
I ILQ + + + + A +L+PTRELA QI + ALG ++ +C +
Sbjct: 65 IPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLV 124
Query: 481 GGTNVREDIRQLESGVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEADECCPE 642
GG + + L HV+V TPGR++D M + ++K VLDEAD E
Sbjct: 125 GGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNE 179
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 105 bits (252), Expect = 2e-23
Identities = 58/162 (35%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Frame = +1
Query: 166 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 345
+ ++++ L ELL+ + G++KPS IQ AI +Q RDVI A++G+GKTA F + +
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371
Query: 346 LQQID-----TSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 501
L I + E + A+++APTRELAQQI++ + +L + + +GG ++ E
Sbjct: 372 LAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEE 431
Query: 502 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
++ G +V+ TPGR+ D + RR N VLDEAD
Sbjct: 432 QGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEAD 473
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 103 bits (248), Expect = 8e-23
Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 4/157 (2%)
Frame = +1
Query: 169 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 348
+TF ++NL LLR G++KP+ IQ I + GRD+ A A +G+GKTA F++ L
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTL 226
Query: 349 QQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 519
+++ + + LIL PTRELA QI ++ L + KC +GG +VRE L
Sbjct: 227 ERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLR 286
Query: 520 SGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEAD 627
S +VV TPGR+ D + ++ + + + +LDEAD
Sbjct: 287 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 323
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 103 bits (247), Expect = 1e-22
Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 8/162 (4%)
Frame = +1
Query: 166 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 345
V TF L +LL + G++ P+ IQ +AI + G+ ++A A +G+GKTA+F + I
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 346 LQQIDT--------SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 501
+ + T R A++LAPTREL Q++ LG L K +GG +
Sbjct: 169 ISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSG 228
Query: 502 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
+ +++ GV +++GTPGRV D++++ + + I FVLDE D
Sbjct: 229 QLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVD 270
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 102 bits (245), Expect = 2e-22
Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 13/175 (7%)
Frame = +1
Query: 142 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSG 312
++T D V V TF +++L E L I + KP+ +Q+ AI ++GRD++A AQ+G
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 313 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNA 462
+GKTA F I+ I D ++ + A+IL+PTRELA QI
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV 266
Query: 463 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
K GGT + + +R+LE GV ++V TPGR+ D++ R + I+ LDEAD
Sbjct: 267 KVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEAD 321
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 101 bits (242), Expect = 4e-22
Identities = 59/156 (37%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Frame = +1
Query: 172 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 342
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 343 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 519
LQ+I R L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 520 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
G +VV TPGR+ D++ R + I VLDEAD
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEAD 314
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 101 bits (242), Expect = 4e-22
Identities = 59/156 (37%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Frame = +1
Query: 172 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 342
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 343 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 519
LQ+I R L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 520 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
G +VV TPGR+ D++ R + I VLDEAD
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEAD 314
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 101 bits (242), Expect = 4e-22
Identities = 59/156 (37%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Frame = +1
Query: 172 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 342
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 343 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 519
LQ+I R L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 520 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
G +VV TPGR+ D++ R + I VLDEAD
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEAD 314
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 101 bits (241), Expect = 5e-22
Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 10/159 (6%)
Frame = +1
Query: 184 MNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID- 360
++L + L + G IQ+ ++P +QGRD+IA+A++GTGKT F I I++++
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTE 166
Query: 361 -----TSIREC----QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 513
T+ R + L+LAPTRELA+Q++K + +L+ C GG +
Sbjct: 167 EAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVC--VYGGVSYTIQQSA 224
Query: 514 LESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
L GV VVVGTPGR+ D+I R+L ++ VLDEAD+
Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQ 263
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 100 bits (240), Expect = 7e-22
Identities = 57/156 (36%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Frame = +1
Query: 172 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 342
TF+ L E+LR + + GF P+ IQ + +Q RD++A A++G+GKT + I
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
Query: 343 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 519
+L+ R LILAPTRELA QIQ + G C GG +++LE
Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELE 555
Query: 520 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
G +VV TPGR+ D++ + + + L VLDEAD
Sbjct: 556 RGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEAD 591
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 100 bits (240), Expect = 7e-22
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 5/164 (3%)
Frame = +1
Query: 151 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 330
D + V+TF+D +++ I +EKP+AIQ +A+ + GRDVI A++G+GKTA
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAA 281
Query: 331 FSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 495
F + ++ I ++ + +I APTRELA QI + A GG +
Sbjct: 282 FVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSK 341
Query: 496 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
E ++L++G +VV TPGR+ DM+ +AL VLDEAD
Sbjct: 342 HEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEAD 385
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 99 bits (238), Expect = 1e-21
Identities = 65/175 (37%), Positives = 92/175 (52%), Gaps = 13/175 (7%)
Frame = +1
Query: 142 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSG 312
++T D V V TF +++L E L I + KP+ +Q+ AI GRD++A AQ+G
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 313 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNA 462
+GKTA F I+ I D I + A+IL+PTRELA QI
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGV 253
Query: 463 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
K GGT V + IR+LE GV ++V TPGR+ D++ R + ++ LDEAD
Sbjct: 254 KVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEAD 308
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 98.7 bits (235), Expect = 3e-21
Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 6/157 (3%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYA-YGFEKPSAIQQRAIMPCIQG---RDVIAQAQSGTGKTATFSIS 342
F+D+NL EL++G+Y FEKPS IQ ++ P I + +IAQA +G+GKT F +
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAISL-PMIMTPPHKHLIAQAHNGSGKTTCFVLG 151
Query: 343 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT--NVREDIRQL 516
+L ++D ++RE QAL + PTRELA Q +V+ +G + + R
Sbjct: 152 MLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGA 211
Query: 517 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
HVV+GTPG + + + L N +K+ V DEAD
Sbjct: 212 PVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEAD 248
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 96.7 bits (230), Expect = 1e-20
Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Frame = +1
Query: 151 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 330
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 331 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 495
+ + L + R Q LILAPTRELA QIQ+ G + GG
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
Query: 496 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
IR L GV +V+ TPGR+ DM+ + + + VLDEAD
Sbjct: 279 GPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEAD 322
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 96.7 bits (230), Expect = 1e-20
Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Frame = +1
Query: 151 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 330
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 331 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 495
+ + L + R Q LILAPTRELA QIQ+ G + GG
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
Query: 496 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
IR L GV +V+ TPGR+ DM+ + + + VLDEAD
Sbjct: 279 GPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEAD 322
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 96.7 bits (230), Expect = 1e-20
Identities = 49/154 (31%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 354
F+ +NL + I G++ P+ IQ++ + + G DV+A A++G+GKTA F I +L++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 355 IDTSIRE--CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 528
+ + + +ALIL+PTR+LA+Q K LG + + +GG ++ + +L G
Sbjct: 90 LKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGP 149
Query: 529 HVVVGTPGRVYDMITR-RALHANTIKLFVLDEAD 627
V++ TPGR+ +++ + T++ V DEAD
Sbjct: 150 DVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEAD 183
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 95.9 bits (228), Expect = 2e-20
Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 4/155 (2%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 354
F+ + L E + G KP+ +Q + + GRDV+ AQ+G+GKTA F++ IL +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 355 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 534
+ AL++ PTRELA Q+ + ALG LN +C +GG ++ L S H+
Sbjct: 120 LAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHI 179
Query: 535 VVGTPGRVYDMITRR----ALHANTIKLFVLDEAD 627
V+ TPGR+ ++ + + T K VLDEAD
Sbjct: 180 VITTPGRIKVLLENNPDVPPVFSRT-KFLVLDEAD 213
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 94.7 bits (225), Expect = 5e-20
Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 4/144 (2%)
Frame = +1
Query: 208 RGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIREC 378
R +Y+ GF PS IQ ++ +Q RD++A A++G+GKT + I LQ+I R
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG 301
Query: 379 QA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 555
L+L+PTRELA QIQ + G C GG ++++E GV +VV TPGR
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGR 361
Query: 556 VYDMITRRALHANTIKLFVLDEAD 627
+ D++ + + + + VLDEAD
Sbjct: 362 LNDILEMKRISLHQVSYLVLDEAD 385
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 93.9 bits (223), Expect = 8e-20
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Frame = +1
Query: 151 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 330
D + V++F D+ + +L + GF +P+ IQ + ++GRD+I A++G+GKT +
Sbjct: 93 DIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLS 152
Query: 331 FSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 495
+ + + ++ L+LAPTRELA QIQ+ G K GG
Sbjct: 153 YLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPK 212
Query: 496 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
+R L+ GV +V+ TPGR+ DM+ + + VLDEAD
Sbjct: 213 GPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEAD 256
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 93.9 bits (223), Expect = 8e-20
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 10/206 (4%)
Frame = +1
Query: 40 SSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGT-LDTDWDQVVETFDDMNLKEELLRGI 216
S + + +D PE +G + + G ++ ++TF + NL E +L
Sbjct: 72 SEKNKKKDVPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCC 131
Query: 217 YAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC------ 378
FEKPS IQ + GRD+I A++G+GKT F I + + ++
Sbjct: 132 KT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKK 189
Query: 379 ---QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTP 549
L+L+PTRELA QI V+ G+ K GG++ I + SGV +V+GTP
Sbjct: 190 VNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTP 249
Query: 550 GRVYDMITRRALHANTIKLFVLDEAD 627
GR+ D+I L + + VLDEAD
Sbjct: 250 GRLRDLIESNVLRLSDVSFVVLDEAD 275
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 93.1 bits (221), Expect = 1e-19
Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Frame = +1
Query: 166 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 345
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 346 LQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 495
+ I D + + A+IL+PTRELA QI K GGT +
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 496 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
+ +R+LE G ++V TPGR+ D++ R + I+ LDEAD
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEAD 313
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 93.1 bits (221), Expect = 1e-19
Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Frame = +1
Query: 166 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 345
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 346 LQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 495
+ I D + + A+IL+PTRELA QI K GGT +
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 496 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
+ +R+LE G ++V TPGR+ D++ R + I+ LDEAD
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEAD 313
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 93.1 bits (221), Expect = 1e-19
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 5/162 (3%)
Frame = +1
Query: 172 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SIS 342
TFD ++L E+ I GF+ + IQ +I P ++G+DV+ A++G+GKT F ++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Query: 343 ILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 519
+L + S R +++ PTRELA Q + V L H + IGG N R + +++
Sbjct: 150 LLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIA 209
Query: 520 SGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADECCPE 642
SG ++V+ TPGR+ D + +A +K V+DEAD E
Sbjct: 210 SGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEE 251
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 87.8 bits (208), Expect = 5e-18
Identities = 53/168 (31%), Positives = 94/168 (55%), Gaps = 14/168 (8%)
Frame = +1
Query: 166 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 345
++ F DM LLR + G P+ IQ + + + GRD+I A +G+GKT F + +
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 346 L-----QQIDTSIRECQ---ALILAPTRELAQQ----IQKVVIALGD--HLNAKCHACIG 483
+ ++I I + AL++ P+RELA+Q +++ V +L + + + CIG
Sbjct: 156 IILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIG 215
Query: 484 GTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
G ++R + ++ GVH+VV TPGR+ D++ ++ + + +L LDEAD
Sbjct: 216 GVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEAD 263
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 87.0 bits (206), Expect = 9e-18
Identities = 50/118 (42%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Frame = +1
Query: 286 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 462
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 463 KCHACIGGTNVR--EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
K GG N++ +D+ + E H+VVGTPGRV + + L ++ F+LDE D+
Sbjct: 62 KVSVFYGGVNIKIHKDLLKNEC-PHIVVGTPGRVLALAREKDLSLKNVRHFILDECDK 118
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 87.0 bits (206), Expect = 9e-18
Identities = 45/132 (34%), Positives = 75/132 (56%), Gaps = 8/132 (6%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTREL 411
+AI + G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 412 AQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHA 591
Q++ LG L K +GG + + +++ GV +++GTPGRV D++++ +
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIEL 121
Query: 592 NTIKLFVLDEAD 627
+ I FVLDE D
Sbjct: 122 DNIMTFVLDEVD 133
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 86.2 bits (204), Expect = 2e-17
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 8/167 (4%)
Frame = +1
Query: 151 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 330
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GKT
Sbjct: 523 DVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLG 582
Query: 331 FSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 495
F + +L+ I D E L++APTREL QQI + L +C GG+ V
Sbjct: 583 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGV 642
Query: 496 REDIRQLESGVHVVVGTPGRVYDMI---TRRALHANTIKLFVLDEAD 627
+ I +L+ G +VV TPGR+ D++ + + + + V+DEAD
Sbjct: 643 AQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEAD 689
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 85.0 bits (201), Expect = 4e-17
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Frame = +1
Query: 160 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 339
++VE F ++ L EE++ + E P+ IQ I ++ + V+ + +G+GKT + +
Sbjct: 109 KLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLL 168
Query: 340 SILQQI---------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 492
I+Q + T R + ++L PTREL++Q+ +V ++ H + GG+
Sbjct: 169 PIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSR 228
Query: 493 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
+R L + + +VVGTPGR+ I + I VLDEAD
Sbjct: 229 IRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEAD 273
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 84.6 bits (200), Expect = 5e-17
Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 15/169 (8%)
Frame = +1
Query: 169 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 348
++F+++ L + LL + GF P+ +Q A+ I+G D + Q+ +G+GKT + + IL
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
Query: 349 QQI-------------DTSIRECQALILAPTRELAQQI-QKVVIALGDHLNAKCHACIGG 486
+I + E QA+I+AP+REL QI ++V LG +GG
Sbjct: 170 SEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGG 229
Query: 487 TN-VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADE 630
N +R++ ++ +VVGTPGR+ ++ LH + + VLDE DE
Sbjct: 230 ANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDE 278
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 84.2 bits (199), Expect = 7e-17
Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 8/167 (4%)
Frame = +1
Query: 151 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 330
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GKT
Sbjct: 390 DVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLG 449
Query: 331 FSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 495
F + +L+ I D E L++APTREL QQI + L C GG+ V
Sbjct: 450 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGV 509
Query: 496 REDIRQLESGVHVVVGTPGRVYDMI---TRRALHANTIKLFVLDEAD 627
+ I +L+ G +VV TPGR+ D++ + + + + V+DEAD
Sbjct: 510 AQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEAD 556
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 83.4 bits (197), Expect = 1e-16
Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Frame = +1
Query: 169 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SI 339
+TF+ ++L + + I GF + + IQ +AI P + G DV+ A++G+GKT F ++
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Query: 340 SILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 516
+L ++ + R L++ PTRELA Q V L + + IGG + + L
Sbjct: 214 ELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEIL 273
Query: 517 ESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEAD 627
GV+++V TPGR+ D + +K V+DEAD
Sbjct: 274 AKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEAD 311
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 83.4 bits (197), Expect = 1e-16
Identities = 51/168 (30%), Positives = 89/168 (52%), Gaps = 14/168 (8%)
Frame = +1
Query: 166 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---- 333
++ F DM +L + G +P+ IQ + + + GRD+I A +G+GKT F
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 334 -SISILQQIDTSIRECQA---LILAPTRELAQQIQKVV------IALGDHLNAKCHACIG 483
I++ +++ I + LI+ P+RELA+Q +VV + + + CIG
Sbjct: 205 IMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIG 264
Query: 484 GTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
G ++R + ++ GVH+VV TPGR+ DM+ ++ + + + LDEAD
Sbjct: 265 GIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEAD 312
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 79.4 bits (187), Expect = 2e-15
Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 24/198 (12%)
Frame = +1
Query: 106 SYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI-MPCIQG 282
S DG ++ + + + M L L++ IY F++P+ IQ+ + QG
Sbjct: 169 SCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQG 228
Query: 283 RDVIAQAQSGTGKTATFSISILQQI-DTSIR----------ECQ---------ALILAPT 402
+DVI A++G+GKT F + ILQ++ D + E Q ALI+ PT
Sbjct: 229 KDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPT 288
Query: 403 RELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMIT--- 573
RELA Q+ + + +L+ K +GG + R+L+ +VV TPGR++++++
Sbjct: 289 RELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGE 348
Query: 574 RRALHANTIKLFVLDEAD 627
+ + +++ FVLDEAD
Sbjct: 349 KHLVELHSLSFFVLDEAD 366
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 79.4 bits (187), Expect = 2e-15
Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 14/165 (8%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI----S 342
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + +
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 343 ILQQIDT-----SIRECQALILAPTRELAQQIQKVVIA-LGDHLNAKCHACIGGTNVRED 504
+L+ +++ + LIL PTRELA QI A L +H IGGT R D
Sbjct: 437 VLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLD 496
Query: 505 IRQLES-GVHVVVGTPGRVYDMITRRA---LHANTIKLFVLDEAD 627
++LES +++ TPGR+ D I ++ +KLF++DEAD
Sbjct: 497 QQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEAD 541
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 79.4 bits (187), Expect = 2e-15
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 9/155 (5%)
Frame = +1
Query: 190 LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS- 366
L E+++ + GFE + +Q I +DV+ A +G+GKT F + ++ I S
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 367 -----IRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQL-ESG 525
+ +I++PTREL+ QI KV L N +GG V D+ L E G
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 526 VHVVVGTPGRVYDMITR-RALHANTIKLFVLDEAD 627
++++GTPGR+ DM+ R L +++ +LDEAD
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEAD 177
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 79.0 bits (186), Expect = 2e-15
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 13/164 (7%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 354
FD L L+GI GF+ + +Q+ + +QG+D++A+A++GTGKT F + ++
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 355 I--------DTSIRECQALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGGTNVREDI 507
+ D L++ PTRELA Q + I L H + IGGT + +
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 201
Query: 508 RQLE-SGVHVVVGTPGRVYDMITRRALHANT---IKLFVLDEAD 627
R+L+ S ++V TPGR+ D I + A +K+ VLDEAD
Sbjct: 202 RRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEAD 245
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 78.2 bits (184), Expect = 4e-15
Identities = 58/205 (28%), Positives = 93/205 (45%), Gaps = 10/205 (4%)
Frame = +1
Query: 46 ERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAY 225
+R++ + ++ K+ S ++ + ++ D V F + L + A
Sbjct: 58 KRKASEEEDEVKSDSSSEKKKSSKKVKLGVEDVEVDNPNAVSKF---RISAPLREKLKAN 114
Query: 226 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI----------RE 375
G E IQ + G D++ +A++G GKT F + IL+ + R
Sbjct: 115 GIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRS 174
Query: 376 CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 555
L+L PTRELA+Q+ A G L GG + +L+ GV +VVGTPGR
Sbjct: 175 PSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGR 234
Query: 556 VYDMITRRALHANTIKLFVLDEADE 630
+ D I R+ L + ++ VLDEADE
Sbjct: 235 IKDHIERQNLDFSYLQFRVLDEADE 259
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 78.2 bits (184), Expect = 4e-15
Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 16/167 (9%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI----S 342
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + +
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 343 ILQQIDT-----SIRECQALILAPTRELAQQIQ---KVVIALGDHLNAKCHACIGGTNVR 498
+L+ +++ + ALIL PTRELA QI K ++ D + + IGGT +
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQ--TLIGGTRFK 447
Query: 499 EDIRQLES-GVHVVVGTPGRVYDMITRRA---LHANTIKLFVLDEAD 627
D ++LES +++ TPGR+ D I ++ +KLF++DEAD
Sbjct: 448 LDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEAD 494
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 77.8 bits (183), Expect = 6e-15
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Frame = +1
Query: 169 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 348
+TF ++ E++++ + F++P+ IQ A P I G+ I QSG+GKT + + ++
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 349 QQI--------DTSIREC-QALILAPTRELAQQIQKVVIALG-DHLNAKCHACIGGTNVR 498
Q++ S C + ++L PT ELA Q+ ++ + + GG R
Sbjct: 434 QRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQR 493
Query: 499 EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 627
+ LE GV V++ TPGR ++ L + ++ +LDE D
Sbjct: 494 TQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVD 536
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 77.4 bits (182), Expect = 8e-15
Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 13/209 (6%)
Frame = +1
Query: 40 SSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIY 219
SS+ E+ K S D P G T D+ + FD L L+ I
Sbjct: 341 SSDEDDENDEPLIKKAASAKAVQTDKPTGEHVKTSDSYLSKT--RFDQFPLSPLSLKAIK 398
Query: 220 AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRE 375
GFE + +Q+ + +QG+DV+A+A++GTGKT F + ++ + D+
Sbjct: 399 DAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPP 458
Query: 376 CQALILAPTRELAQQ-IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG-VHVVVGTP 549
L++ PTRELA Q + L H + IGGT + + R++++ ++V TP
Sbjct: 459 IIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATP 518
Query: 550 GRVYDMITRRALHANT---IKLFVLDEAD 627
GR+ D I + A +K+ VLDEAD
Sbjct: 519 GRLKDHIENTSGFATRLMGVKVLVLDEAD 547
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 77.4 bits (182), Expect = 8e-15
Identities = 50/169 (29%), Positives = 93/169 (55%), Gaps = 12/169 (7%)
Frame = +1
Query: 157 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 336
++ ++F+++ L L+R + G EKP+ IQQ AI ++G+DV+A+A++G+GKT +
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYL 101
Query: 337 ISILQQI---DTSIRE---CQALILAPTRELAQQIQKVVIALGDHLNAKCHAC-IGGTNV 495
+ +LQ++ D+ ++ A IL P+REL QQ+ V +L + + A + +
Sbjct: 102 LPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMS 161
Query: 496 REDIRQLESGV-HVVVGTPGRVYDMITRRALH----ANTIKLFVLDEAD 627
D+R +G+ ++V TP + L + ++ + VLDEAD
Sbjct: 162 ASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEAD 210
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 74.5 bits (175), Expect = 5e-14
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 9/176 (5%)
Frame = +1
Query: 127 MDPGTLDTDWDQVVETFDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQ 300
MD +T ++ F ++ L E+++ + GFE + +Q I +DV+
Sbjct: 1 MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVD 60
Query: 301 AQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQIQKVVIALGDHLNA 462
A +G+GKT F + ++ I S + +I++PTREL+ QI KV A+ A
Sbjct: 61 AATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDF-A 119
Query: 463 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEAD 627
KC N E E G ++++GTPGR+ DM+ R L +++ +LDEAD
Sbjct: 120 KCREVEADMNTLE-----EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEAD 170
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 72.5 bits (170), Expect = 2e-13
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Frame = +1
Query: 175 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 354
FD L L+ I G+E + +Q+ + ++G+DV+A+A++GTGKT F + ++
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115
Query: 355 I--------DTSIRECQALILAPTRELAQQ-IQKVVIALGDHLNAKCHACIGGTNVREDI 507
+ D AL++ PTRELA Q + L H + IGGT + +
Sbjct: 116 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 175
Query: 508 RQLESG-VHVVVGTPGRVYDMITRR---ALHANTIKLFVLDEAD 627
+++++ ++V TPGR+ D I A +K+ VLDEAD
Sbjct: 176 KRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEAD 219
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 71.3 bits (167), Expect = 5e-13
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 6/150 (4%)
Frame = +1
Query: 196 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 375
E +L + GF P+ IQ+ A+ GRD I AQ+G+GKT T+ + I I+
Sbjct: 85 EHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSS 144
Query: 376 CQALILAPTRELAQQIQKV--VIALGDHLNAK-C--HACIGGTNVREDIRQLES-GVHVV 537
QA+I+ PTREL Q+ KV ++A ++ K C A + G +R L++ ++
Sbjct: 145 VQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAIL 204
Query: 538 VGTPGRVYDMITRRALHANTIKLFVLDEAD 627
V T + M+ + +++++ V+DE D
Sbjct: 205 VATVASLCHMLEKHIFRIDSVRVLVVDEVD 234
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 70.1 bits (164), Expect = 1e-12
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Frame = +1
Query: 175 FDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 348
F D+ L +++ + FE + +Q I +DV A +G+GKT F + ++
Sbjct: 16 FSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
Query: 349 QQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDI 507
+ + S + +I++PTREL+ QI V L N +GG V+ D+
Sbjct: 76 EILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADM 135
Query: 508 RQLES-GVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEAD 627
+ +E G +V++GTPGR+ D++ R L +++ +LDEAD
Sbjct: 136 KIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEAD 177
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 69.3 bits (162), Expect = 2e-12
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 9/143 (6%)
Frame = +1
Query: 226 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------AL 387
GFE P+ +Q +AI + GRDV+ A +GTGKT + ++ + + AL
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108
Query: 388 ILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGTNVREDIRQLESGVHVVVGTPGRVYD 564
++ PTREL Q+ + + L + + GG ++ +L G+ +++ TPGR+ D
Sbjct: 109 VIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLD 168
Query: 565 MITRRA--LHANTIKLFVLDEAD 627
+ A +H N ++ + DEAD
Sbjct: 169 HLKNTASFVHKN-LRWVIFDEAD 190
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 60.9 bits (141), Expect = 7e-10
Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 5/192 (2%)
Frame = +1
Query: 67 PEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSA 246
P+DSK G S+D + GT+ + + V F + + ++ RG+ + +
Sbjct: 47 PKDSKIGKSEDGKN---------GTVFSRYAGV-RKFAQLPISDKTKRGLKDAKYVDMTD 96
Query: 247 IQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELA 414
+Q AI + GRD++ A++G+GKT F I IL+++ + +I++PTRELA
Sbjct: 97 VQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELA 156
Query: 415 QQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD-MITRRALHA 591
Q V+ +G IGG + ++ ++++V PGR+ M
Sbjct: 157 AQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHMDETPNFEC 216
Query: 592 NTIKLFVLDEAD 627
+++ +LDEAD
Sbjct: 217 PQLQILILDEAD 228
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 58.8 bits (136), Expect = 3e-09
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
Frame = +1
Query: 202 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID-TSIREC 378
+LR + GF++P+ IQ++AI + GR+ A A +G+GKT F +L ++ S
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGI 211
Query: 379 QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRV 558
+A+IL+P RELA Q + L N D +L V++ TP R+
Sbjct: 212 RAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFSKL--WCDVLISTPMRL 269
Query: 559 YDMITRRALHANTIKLFVLDEADE 630
I + + + ++ VLDE+D+
Sbjct: 270 KRAIKAKKIDLSKVEYLVLDESDK 293
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 54.0 bits (124), Expect = 8e-08
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 23/156 (14%)
Frame = +1
Query: 244 AIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQ 420
A+ I P RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q
Sbjct: 50 AVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQ 109
Query: 421 IQKVVIALGDHLNAKCHACIGGTNVREDIRQ---------------------LESGVHVV 537
++ V A+ + + +G +++ +I Q LES V ++
Sbjct: 110 VKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDIL 169
Query: 538 VGTPGRVYDMITR-RALHANTIKLFVLDEADECCPE 642
V TPGR+ D I + ++ V+DE D E
Sbjct: 170 VATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLRE 205
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 41.9 bits (94), Expect = 3e-04
Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 21/182 (11%)
Frame = +1
Query: 145 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 324
DT + ++ + L + + + GF++PS Q I + G+DVI A++G+GKT
Sbjct: 72 DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKT 131
Query: 325 ATFSISILQQIDTSIRECQ--------------ALILAPTRELAQQIQKVVIALGDHLN- 459
+ I+ Q+ + + + +LIL P L +Q+ ++V L D
Sbjct: 132 HGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGN 191
Query: 460 --AKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI----TRRALHANTIKLFVLDE 621
+ A G + + ++V TP + + I RR +K V DE
Sbjct: 192 PLLRVEAVCGSQGWPDRLPD------IIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDE 245
Query: 622 AD 627
AD
Sbjct: 246 AD 247
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 33.1 bits (72), Expect = 0.16
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +1
Query: 385 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES-GVHVVVGTPGRVY 561
L L P++ A Q++ V AL + + G + I L+S +V TP R+
Sbjct: 200 LYLVPSQSKASQVRSVCKALKG-IGIHTVSLHQGAPLDHQISGLKSVEPEFIVATPERLL 258
Query: 562 DMITRRALHANTIKLFVLDEADECC 636
+++T + + + + L V+DE C
Sbjct: 259 EIVTLKGVDISNVSLLVIDELGSLC 283
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 32.7 bits (71), Expect = 0.21
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 85 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 258
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 259 AIMPCIQGR 285
+ P + GR
Sbjct: 141 EVDPRLVGR 149
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -1
Query: 589 HEAHDELSYHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQ 443
H+ H H H+ EC H+H H H +C H H SDHQ
Sbjct: 597 HDHHHHSHSHKHE-ECNHNHDHE----HQSHSHNHEECNHNHDHHSDHQ 640
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = -1
Query: 589 HEAHDELS-YHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQELS 434
HE H + S H H+ H HHS H H +C H H +HQ S
Sbjct: 579 HEEHHQHSDSHKHEEHHEHDHHHHS------HSHKHEECNHN--HDHEHQSHS 623
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 31.9 bits (69), Expect = 0.37
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 9/149 (6%)
Frame = +1
Query: 223 YGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 402
+G K A Q+ I + GRDV+ +G GK S+ Q+ +R L+++P
Sbjct: 85 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGK------SLCYQLPAMLRGGTTLVVSPL 138
Query: 403 RELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDIRQLESG---VHVVVGTPGRV---- 558
L Q + ALG ++A + G N + + LE G + ++ TP +V
Sbjct: 139 LSLIQDQVMGLAALG--ISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKSK 196
Query: 559 -YDMITRRALHANTIKLFVLDEADECCPE 642
+ + +A + L +DEA CC +
Sbjct: 197 RFMSKLEKCHNAGRLSLISIDEA-HCCSQ 224
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +1
Query: 334 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 486
+++ L+++ +++EC +A+ + P+ A Q++ + + LG+ NA+ H C G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 385 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 489
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 526
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = -2
Query: 291 NIASLDARHYCALLDCRRFFKTIGVYASQQFFFE 190
NI+ ++ + C+L+DC++ + + +A+Q F+
Sbjct: 373 NISEVEKKKVCSLMDCKKLSRDVYAHAAQNDRFQ 406
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 28.3 bits (60), Expect = 4.6
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Frame = +1
Query: 193 KEELLRGI-YAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI 369
KE L++ + + +G Q AI + GRD +G GK SI QI
Sbjct: 21 KEALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGK------SICYQIPALA 74
Query: 370 RECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGTNVREDIRQ-LESG---VHV 534
+ L+++P L ++ V+AL + + A+ + T+V+ I + L+SG V +
Sbjct: 75 KPGIVLVVSP---LIALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRL 131
Query: 535 VVGTPGRVYD---MITRRALHA-NTIKLFVLDEA 624
+ TP + M+ R LH+ + L +DEA
Sbjct: 132 LYVTPELIATKGFMLKLRKLHSRGLLNLIAIDEA 165
>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
putative strong similarity to cytosine-5
methyltransferase (METII) [Arabidopsis thaliana]
GI:6523846; contains Pfam profiles PF01426: BAH domain,
PF00145: C-5 cytosine-specific DNA methylase
Length = 1512
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 430 VVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVG 543
V+++L DH ++K H + +R D QL H+V G
Sbjct: 250 VLVSLRDHESSKIHKALSNVALRIDESQLVKSDHLVDG 287
>At2g24020.1 68415.m02869 expressed protein contains Pfam domain
PF02575: Uncharacterized BCR, YbaB family COG0718
Length = 182
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +1
Query: 4 FPFSYCG*NMSYSSERRSEDWPED--SKNG 87
FPFS+ N S +S+RR+ WP+ SKNG
Sbjct: 16 FPFSHVSGNASLNSQRRT--WPKQYKSKNG 43
>At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase ;similar
to UDP-glucose:anthocyanin 5-O-glucosyltransferase
GI:4115563 from [Verbena x hybrida]
Length = 456
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 567 HIIYTTWSAHHHMNTTLQLANIFTDIGAT 481
H + T+ A H+N LQLAN GAT
Sbjct: 13 HYLLVTFPAQGHINPALQLANRLIHHGAT 41
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 352 QIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 486
+++ +++EC +A+ P+ A Q++ + + LG+ NA+ H C+ G
Sbjct: 260 RLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSG 306
>At2g43110.1 68415.m05352 expressed protein
Length = 288
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 493 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLD 618
V E + L+ V++ GTP R+ ++ AL + + + V+D
Sbjct: 191 VEEQVSLLKKRVNIGSGTPNRIKKLVDIEALGLSRLDMIVID 232
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +1
Query: 40 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 138
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
>At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 187 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 279
NL EE L ++ Y F+ P A ++ C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
>At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 187 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 279
NL EE L ++ Y F+ P A ++ C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,475,411
Number of Sequences: 28952
Number of extensions: 361461
Number of successful extensions: 1294
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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