Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12l09r
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804...    28   7.3  
01_07_0357 + 43032552-43033034,43034054-43034383,43035210-430353...    28   9.6  

>03_05_1111 -
           30479793-30479823,30479887-30479978,30480261-30480410,
           30482229-30482354,30482563-30482628,30483134-30483214,
           30483310-30483422,30483553-30483721,30484253-30484330,
           30485489-30485752,30486239-30486379,30486548-30486759,
           30486819-30486940,30487281-30487398,30487925-30487997
          Length = 611

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 506 NVCTVIFEVNIQYIYKSVYCITLKSVYVGIGS 411
           +V T+IF+VN +  + S+  + L +VY G+ +
Sbjct: 219 DVVTIIFQVNSRNCFFSIEFVELSNVYFGVST 250


>01_07_0357 +
           43032552-43033034,43034054-43034383,43035210-43035325,
           43035589-43035679,43035790-43035860,43036202-43036258,
           43036809-43036860,43037139-43037170,43037686-43037753,
           43038148-43038353
          Length = 501

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 503 VCTVIFEVNIQYIYKSVYCITLKSVYVG 420
           VCT+  +VN+ ++   VY I  K+  VG
Sbjct: 434 VCTIDLDVNLHFLGMCVYAIEQKNAMVG 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,500,276
Number of Sequences: 37544
Number of extensions: 286991
Number of successful extensions: 418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)