Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12l08r
         (761 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04280.1 68418.m00421 glycine-rich RNA-binding protein              33   0.27 
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    31   0.84 
At5g40440.1 68418.m04904 mitogen-activated protein kinase kinase...    29   3.4  
At3g02880.1 68416.m00282 leucine-rich repeat transmembrane prote...    29   3.4  
At2g32905.1 68415.m04034 hypothetical protein contains Pfam prof...    29   3.4  
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont...    28   5.9  
At5g56620.1 68418.m07069 no apical meristem (NAM) family protein...    28   7.8  
At4g28780.1 68417.m04115 GDSL-motif lipase/hydrolase family prot...    28   7.8  
At2g19880.1 68415.m02324 ceramide glucosyltransferase, putative ...    28   7.8  
At1g36925.1 68414.m04599 hypothetical protein                          28   7.8  

>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
          Length = 310

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 21/51 (41%), Positives = 24/51 (47%)
 Frame = -2

Query: 298 PQGGAVTDDNLYGLSLTTVDRYTCRSKYEDREVTNTMLCFGLPREGGRDFF 146
           P GG  +  + YG S   VDRY  R +Y DRE        G  R G RD F
Sbjct: 151 PVGGFSSRASAYGGSDGRVDRYADRDRYVDRERYIDDRYDGAARYGARDRF 201


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = -3

Query: 732 PCSQQLAASQPTTLALECLSVTAPVWLKLKSPWATFGSSSVLVPYSPTSISCLLPLVSLE 553
           P       S PTT   +  +VT+P     K+P A+  SS V  P SP  +S   P  +  
Sbjct: 28  PTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTAS-ASSPVESPKSPAPVSESSPPPTPV 86

Query: 552 PSTGP 538
           P + P
Sbjct: 87  PESSP 91


>At5g40440.1 68418.m04904 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK3) similar to NPK2 [Nicotiana
           tabacum] gi|862342|dbj|BAA06731; mitogen-activated
           protein kinase kinase (MAPKK) family, PMID:12119167
          Length = 520

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
 Frame = -2

Query: 631 NVWIQQCAGAVLTNFHILSVATC------FSGAFYRPDTRRIRLGSDIRNEGGLIVNVL 473
           N++ ++    +LT    L  A C      F GAFY PD+ +I +  +  N GG + ++L
Sbjct: 115 NIFEREKRQQLLTEIRTLCEAPCHEGLVDFHGAFYSPDSGQISIALEYMN-GGSLADIL 172


>At3g02880.1 68416.m00282 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00069
           Eukaryotic protein kinase domain, PF00560 Leucine Rich
           Repeat (5 copies)
          Length = 627

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +2

Query: 491 AAFISYVRTETNTTSIGPVEGSRETSGNRQDMEVGEYGTSTLLDPNVAQGDFNLSQTGAV 670
           A  ISY+ +   TTS G ++ S     +  + +V +YG + ++    A    +  +   +
Sbjct: 453 ARAISYLHSRDGTTSHGNIKSSNILLSDSYEAKVSDYGLAPIISSTSAPNRIDGYRAPEI 512

Query: 671 TD 676
           TD
Sbjct: 513 TD 514


>At2g32905.1 68415.m04034 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 205

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -1

Query: 365 SHPSRSTCAPSLKRRAHRLGKHSARRCSYRR*PIRSEPHHSRPIHL*EQIRRQGSYQYNA 186
           S PS S+C    K+R H   + S R+      P+  EP  + P     ++ ++    YN 
Sbjct: 98  SEPSSSSCVTHFKKRRHMDKEESTRKRLKIDSPLEVEPIQTSPPEWLLKVMKREENSYNP 157

Query: 185 LLWLTQ 168
            L  T+
Sbjct: 158 KLISTR 163


>At1g74190.1 68414.m08592 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 965

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -2

Query: 589 FHILSVATCFSGAFYRPDTRRIRLGSDIRNEGGLIVNV-LLANNHHSFDPTNMASDISVV 413
           FH LS AT  +  F R +      GS    E   + N+ LL  + + F+ +    ++S +
Sbjct: 149 FHFLSAATSLTTLFLRSNNMD---GSFPAKELRDLTNLELLDLSRNRFNGSIPIQELSSL 205

Query: 412 RLSSAITLGGNIQQASVILQG 350
           R   A+ L GN    S+ LQG
Sbjct: 206 RKLKALDLSGNEFSGSMELQG 226


>At5g56620.1 68418.m07069 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 386

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
 Frame = +1

Query: 604 HQHTAGSKRCPG-----RLQLEPNWGG 669
           H H  GSK CPG     +   +PNW G
Sbjct: 16  HHHLCGSKHCPGCGRMIQAATKPNWVG 42


>At4g28780.1 68417.m04115 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL3 (GI:15054386), EXL1
           (GI:15054382), EXL2 (GI:15054384) [Arabidopsis
           thaliana]; contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 367

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 291 PCGVFPQPMSSTLKRGGTCTP*RMTEACCILPPRVIAELRRTT-EISLAIFVGSN 452
           P G  P  ++S+    G C P    +A  I  P ++  L+    EI   +F+G+N
Sbjct: 222 PLGCVPAELASSGSVNGECAP-EAQQAAAIFNPLLVQMLQGLNREIGSDVFIGAN 275


>At2g19880.1 68415.m02324 ceramide glucosyltransferase, putative
           similar to ceramide glucosyltransferase (GI:14718995)
           [Gossypium arboreum]; weak similarity to Ceramide
           glucosyltransferase  (Glucosylceramide synthase) (GCS)
           (UDP-glucose:N-acylsphingosine D-glucosyltransferase)
           (GLCT-1) (Swiss-Prot:Q16739) [Homo sapiens]
          Length = 519

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 279 VTAPPCGVFPQPMSSTLKRG 338
           +T+PP  VFP P++S L  G
Sbjct: 289 ITSPPVAVFPHPLASDLSFG 308


>At1g36925.1 68414.m04599 hypothetical protein
          Length = 161

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 424 YRWPYSWDRMSDGYWQVT---HSRSSRLHFVCQNRDEYDE 534
           ++ PY  +   D Y +     H+ SSR H    N DEYD+
Sbjct: 109 HKEPYMQESRQDNYKEAPSKDHASSSRSHNSLYNTDEYDD 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,437,941
Number of Sequences: 28952
Number of extensions: 402279
Number of successful extensions: 986
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)