Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12l07f
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41802| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                27   7.7  

>SB_41802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 305 NWDTPTSRARTALTRLPAGAVYLTLTACELAVAARVTT 192
           +WD   S A   L   P G+  + L AC+L    R TT
Sbjct: 35  SWDALVSLAEDDLKGCPRGSSRVDLQACKLGTGRRFTT 72


>SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -1

Query: 523 NLEYKSINKL*YCFLNLKRLSHKQMHMCLTGGQMSL 416
           +L+ KS+N      L+LK L+HKQ  M L GGQ+ L
Sbjct: 574 SLKRKSMNTNNELVLDLKALTHKQ--MALKGGQILL 607


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 381 RISLQCTNLGTLRLICPPVKHMC 449
           R+ +  T + T RL CPP K +C
Sbjct: 32  RLQIVFTQVVTARLTCPPTKFLC 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,347,643
Number of Sequences: 59808
Number of extensions: 267896
Number of successful extensions: 834
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)