Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12l06r
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               244   8e-65
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         140   1e-33
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)               97   1e-20
SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   7.0  
SB_11005| Best HMM Match : SspH (HMM E-Value=0.85)                     28   7.0  
SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08)                  28   7.0  
SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15)                 28   9.2  
SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)                 28   9.2  
SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03)                    28   9.2  
SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)                 28   9.2  
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)                 28   9.2  
SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)                   28   9.2  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   9.2  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  244 bits (596), Expect = 8e-65
 Identities = 115/154 (74%), Positives = 125/154 (81%), Gaps = 1/154 (0%)
 Frame = -2

Query: 747 HTQMKLLKQRXKKAHIMEIQLNGGT-IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXX 571
           HTQ KLLK R KKAHIMEIQ+NGG  + +KV W RE LE P PV  VF+ DEMID I   
Sbjct: 164 HTQQKLLKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVT 223

Query: 570 XXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 391
                   T RW TKKLPRKTHKGLRKVACIGAWHP+RVSF+VARAGQ GYHHRTE+NKK
Sbjct: 224 KGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVSFSVARAGQAGYHHRTELNKK 283

Query: 390 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 289
           IYRIGQGIHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 284 IYRIGQGIHKKDGKVIKNNASTEYDLTDKSISPM 317


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  140 bits (338), Expect = 1e-33
 Identities = 62/82 (75%), Positives = 70/82 (85%)
 Frame = -2

Query: 288 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 109
           GGFPHYG+VN DF+M+KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHG
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHG 274

Query: 108 RFQTPADKAAFMGTLKKDRIRE 43
           RFQ PA+K AFMG LK DR +E
Sbjct: 275 RFQHPAEKRAFMGMLKSDREKE 296


>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 42/45 (93%), Positives = 45/45 (100%)
 Frame = -2

Query: 423 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 289
           GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 2   GYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46


>SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 380 LDKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 279
           LDK     MA  +   HLLS+T  RNP LH +E++
Sbjct: 247 LDKRFQDEMAFNVSKCHLLSVTNKRNPSLHEYEIN 281


>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 363 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 238
           KK   V +N+  T  D    +   + GFPHY  + +D + IK
Sbjct: 44  KKCWTVTQNDVPTPLDCGLSAWRILSGFPHYKLIEDDHIEIK 85


>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 219 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 70
           K R++  +K  ++H+  +   K  ++F+   SKF H    T A   A  G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366


>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 271 IMGETSHRCNGFLRQVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLT 432
           ++GE       FLR++ +S C++  N+   F   +    D L+ F++  + F T
Sbjct: 274 VLGENFQDLARFLRELQISPCLMVLNYPSFFSADIQKLNDALMFFTSRPLLFET 327


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 748 PHSNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQ-RTSGETYP 623
           PH N +  T    G H  NPT    HR  S  GQ R +G   P
Sbjct: 282 PHQNGSNVTNIPVGGHPSNPTPAAIHRSMSVGGQPRVNGPGNP 324


>SB_11005| Best HMM Match : SspH (HMM E-Value=0.85)
          Length = 105

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 726 KQRXKKAHIMEIQLNGGTIEDKVKWAREHLEK 631
           KQ+  K  + E++ N   +EDKV+W +   EK
Sbjct: 53  KQKLAKNLLREMERNETDVEDKVEWTKAITEK 84


>SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08)
          Length = 337

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +1

Query: 280 ETSHRCNGFLRQVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 444
           ETS R   FLRQV ++ C +   FA++ +     T + LV FS      L+  SY
Sbjct: 9   ETSLRYVSFLRQVYIANCALNAIFAVIAI-----TGNLLVLFSIWKCRLLSEPSY 58


>SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15)
          Length = 291

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 377 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 279
           D   T +MA  +   HLLS+T  RNP LH +E++
Sbjct: 173 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 206


>SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)
          Length = 453

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 377 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 279
           D   T +MA  +   HLLS+T  RNP LH +E++
Sbjct: 204 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 237


>SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03)
          Length = 347

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 377 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 279
           D   T +MA  +   HLLS+T  RNP LH +E++
Sbjct: 275 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 308


>SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 377 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 279
           D   T +MA  +   HLLS+T  RNP LH +E++
Sbjct: 59  DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 92


>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
          Length = 1683

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 377  DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 279
            D   T +MA  +   HLLS+T  RNP LH +E++
Sbjct: 1091 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1124



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 377  DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 279
            D   T +MA  +   HLLS+T  RNP LH +E++
Sbjct: 1283 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1316


>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
          Length = 892

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 377 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 279
           D   T +MA  +   HLLS+T  RNP LH +E++
Sbjct: 643 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 676


>SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)
          Length = 1022

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 377 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 279
           D   T +MA  +   HLLS+T  RNP LH +E++
Sbjct: 832 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 865


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 336  NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCC 229
            ++STE++ + +     G F  +G+V ND   +  CC
Sbjct: 3492 HSSTEFNSTLRGGIKSGKFKDFGKVRNDVDCVNRCC 3527


>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1676

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 377 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 279
           D   T +MA  +   HLLS+T  RNP LH +E++
Sbjct: 895 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 928


>SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 377 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 279
           D   T +MA  +   HLLS+T  RNP LH +E++
Sbjct: 75  DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 108


>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1176

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 377  DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 279
            D   T +MA  +   HLLS+T  RNP LH +E++
Sbjct: 979  DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1012


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,594,647
Number of Sequences: 59808
Number of extensions: 536577
Number of successful extensions: 1170
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)