Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12l06r
         (748 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   424   e-119
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   424   e-119
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   424   e-119
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   424   e-119
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   424   e-119

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  424 bits (1045), Expect = e-119
 Identities = 195/236 (82%), Positives = 211/236 (89%)
 Frame = -2

Query: 747 HTQMKLLKQRXKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXX 568
           H+Q++L+KQR KKAH+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+    
Sbjct: 176 HSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTK 235

Query: 567 XXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKI 388
                  TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKI
Sbjct: 236 GKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKI 295

Query: 387 YRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRI 208
           YRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRI
Sbjct: 296 YRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRI 355

Query: 207 ITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 40
           ITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 356 ITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 411


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  424 bits (1045), Expect = e-119
 Identities = 195/236 (82%), Positives = 211/236 (89%)
 Frame = -2

Query: 747 HTQMKLLKQRXKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXX 568
           H+Q++L+KQR KKAH+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+    
Sbjct: 165 HSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTK 224

Query: 567 XXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKI 388
                  TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKI
Sbjct: 225 GKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKI 284

Query: 387 YRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRI 208
           YRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRI
Sbjct: 285 YRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRI 344

Query: 207 ITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 40
           ITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 345 ITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  424 bits (1045), Expect = e-119
 Identities = 195/236 (82%), Positives = 211/236 (89%)
 Frame = -2

Query: 747 HTQMKLLKQRXKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXX 568
           H+Q++L+KQR KKAH+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+    
Sbjct: 152 HSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTK 211

Query: 567 XXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKI 388
                  TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKI
Sbjct: 212 GKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKI 271

Query: 387 YRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRI 208
           YRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRI
Sbjct: 272 YRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRI 331

Query: 207 ITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 40
           ITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 332 ITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  424 bits (1045), Expect = e-119
 Identities = 195/236 (82%), Positives = 211/236 (89%)
 Frame = -2

Query: 747 HTQMKLLKQRXKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXX 568
           H+Q++L+KQR KKAH+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+    
Sbjct: 152 HSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTK 211

Query: 567 XXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKI 388
                  TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKI
Sbjct: 212 GKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKI 271

Query: 387 YRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRI 208
           YRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRI
Sbjct: 272 YRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRI 331

Query: 207 ITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 40
           ITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 332 ITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  424 bits (1045), Expect = e-119
 Identities = 195/236 (82%), Positives = 211/236 (89%)
 Frame = -2

Query: 747 HTQMKLLKQRXKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXX 568
           H+Q++L+KQR KKAH+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+    
Sbjct: 165 HSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTK 224

Query: 567 XXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKI 388
                  TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKI
Sbjct: 225 GKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKI 284

Query: 387 YRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRI 208
           YRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRI
Sbjct: 285 YRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRI 344

Query: 207 ITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 40
           ITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 345 ITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,930,366
Number of Sequences: 53049
Number of extensions: 760692
Number of successful extensions: 2200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2200
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3396574665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)