Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12l06r
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 290 6e-79
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 290 6e-79
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 284 5e-77
At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family prote... 30 1.4
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 29 3.3
At3g60400.1 68416.m06755 mitochondrial transcription termination... 29 3.3
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ... 28 5.7
At4g38360.2 68417.m05424 expressed protein contains Pfam profile... 27 10.0
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 27 10.0
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 290 bits (712), Expect = 6e-79
Identities = 138/231 (59%), Positives = 170/231 (73%), Gaps = 1/231 (0%)
Frame = -2
Query: 747 HTQMKLLKQ-RXKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXX 571
HTQ++ +K + KKAH+MEIQ+NGGTI KV +A EK IP+++VF +DEMID I
Sbjct: 165 HTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVT 224
Query: 570 XXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 391
+RW +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKK 284
Query: 390 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 211
IYR+G K G + A TEYD +EK +TPMGGFPHYG V +D++MIKGCC+GPKKR
Sbjct: 285 IYRLG-----KVG-TEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKR 338
Query: 210 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 58
++TLR+SL T R ALE+I LKFIDT+S FGHGRFQT +K F + K
Sbjct: 339 VVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 290 bits (712), Expect = 6e-79
Identities = 138/231 (59%), Positives = 170/231 (73%), Gaps = 1/231 (0%)
Frame = -2
Query: 747 HTQMKLLKQ-RXKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXX 571
HTQ++ +K + KKAH+MEIQ+NGGTI KV +A EK IP+++VF +DEMID I
Sbjct: 165 HTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVT 224
Query: 570 XXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 391
+RW +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKK 284
Query: 390 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 211
IYR+G K G + A TEYD +EK +TPMGGFPHYG V +D++MIKGCC+GPKKR
Sbjct: 285 IYRLG-----KVG-TEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKR 338
Query: 210 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 58
++TLR+SL T R ALE+I LKFIDT+S FGHGRFQT +K F + K
Sbjct: 339 VVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 284 bits (696), Expect = 5e-77
Identities = 136/231 (58%), Positives = 170/231 (73%), Gaps = 2/231 (0%)
Frame = -2
Query: 747 HTQMKLLKQ-RXKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXX 571
HTQ++ +K + KKAH+ EIQ+NGG I KV +A EK +PVD++F +DEMID I
Sbjct: 165 HTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVT 224
Query: 570 XXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 391
+RW +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 284
Query: 390 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 211
+YR+G K G+ ++A TEYD +EK ITPMGGFPHYG V D++MIKGCC+GPKKR
Sbjct: 285 VYRVG-----KVGQE-THSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKR 338
Query: 210 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG-TLK 61
++TLR++L T R A+E+I LKFID +S GHGRFQT +KA F G T+K
Sbjct: 339 VVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTIK 389
>At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family protein
similar to monoglyceride lipase from [Homo sapiens]
GI:14594904, [Mus musculus] GI:2632162; contains Pfam
profile PF00561: hydrolase, alpha/beta fold family
Length = 382
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 601 LGKHRIDRDRFLQMFSGPFHFVLDGTT 681
L KH + +D+ L+++ G +H +L+G T
Sbjct: 334 LHKHAVSQDKTLKLYPGGYHCILEGDT 360
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = -2
Query: 300 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRK---SLRVHTKRAALEKINLKFIDT 130
I P+ P Y V DF + KGC P+K+ L SLR H ++K
Sbjct: 286 ILPINDDPCYKCVECDFCLHKGCASLPRKKAHFLHNHKISLRAHKDDVYVDKCG-----A 340
Query: 129 SSKFGHGRFQTPADKAAFMGTLKKD 55
+ +G DK++ G +K D
Sbjct: 341 CKTYSNGFKYECHDKSSCRGNIKYD 365
>At3g60400.1 68416.m06755 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 558
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -2
Query: 420 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 268
Y MNK Y G+ K+D +++N A +DL + I+ G H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314
>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 253
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 742 SNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQRTSGETYPCRFC 611
S + K A +EGS G +G E G+ SG+ Y CRFC
Sbjct: 18 SKDGNKQALEEGSSSGQRK----KKGSKE-GKDESGKVYECRFC 56
>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 485
Score = 27.5 bits (58), Expect = 10.0
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -2
Query: 456 VSFTVARAGQKGYHHRTEMNKKIYRIGQGI--HKKDGKVIKNNASTEYDLSEKSI 298
V FTV +A + T+ N+K+++I Q I H K+ + +K+++ S + I
Sbjct: 373 VRFTVTQAVEPMEKSITKFNEKLHKISQNIKKHDKEKRRVKDDSCMSSSPSRRVI 427
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.5 bits (58), Expect = 10.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 593 ISSWANTESTGIGFSRCSLAHFTLSSMVPPLSWISIM 703
++ WA ES IG SLA T SS PL +S++
Sbjct: 387 VTLWAKQESNEIGAGSLSLASATGSSDRLPLKKVSVL 423
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,957,464
Number of Sequences: 28952
Number of extensions: 365082
Number of successful extensions: 935
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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