Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k24r
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 31 0.69
02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313... 31 1.2
05_01_0570 + 5061600-5062142,5062790-5062972 29 2.8
12_01_0894 - 8661025-8661147,8661701-8661769,8661798-8661800 29 3.7
03_05_0065 + 20450814-20452748 29 3.7
01_06_0616 + 30640887-30642314,30642410-30642520,30642587-30642625 29 3.7
12_01_0059 + 494876-494924,496060-496211,496344-496531,496971-49... 29 4.8
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 29 4.8
01_05_0612 - 23652121-23652400,23653031-23654427 29 4.8
10_08_0108 + 14860469-14861032 28 6.4
06_03_0739 + 24004629-24005219 28 6.4
05_04_0069 - 17639386-17641380 28 6.4
02_04_0343 - 22166148-22166318,22166422-22166465,22166563-221666... 28 6.4
10_08_0032 - 14288522-14290465 28 8.5
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 28 8.5
02_04_0411 + 22670418-22670499,22670708-22671045 28 8.5
>11_01_0058 +
438000-438230,438847-438902,440003-440117,440314-440424,
442331-442518,442957-443013,443109-443268,443368-443436,
443580-443699
Length = 368
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = +1
Query: 16 WIQEVKRANANA*H---QGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSR 162
+IQE N +A H KR +E LW G PE PW W R
Sbjct: 304 FIQEQMLKNGHAWHFKTYDKRPEFARWEREARAANRGLWASGNPEKPWDWRR 355
>02_03_0351 +
18030656-18030823,18030963-18031113,18031214-18031309,
18032027-18032103,18032627-18032706,18033216-18033276,
18034153-18034220,18034312-18034393,18034552-18034638,
18035009-18035086,18035336-18035455,18035554-18035730
Length = 414
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +3
Query: 180 TRAQHVSGDSTVNGSVTLDAGILIDGPDLDVTELLRIRPSERCSTPTSSPNNLVI 344
TRA H SG+ST+ G++ + D PD+D L+ + P+ SP + I
Sbjct: 132 TRALHFSGNSTIEGAINWLSEHQED-PDIDEPLLVPANTITEANKPSLSPEEMKI 185
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 35 GQTRTLNT-RASDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQSTT 193
G TR + R +R+T +SR GRG G R G RRP+ + TT
Sbjct: 128 GPTRVHGSARPRQRRRATRARSRLSAGRGDGVGGARGRAVRGSARRRPRKEETT 181
>12_01_0894 - 8661025-8661147,8661701-8661769,8661798-8661800
Length = 64
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +1
Query: 109 RTRLWRRGPPESPWHWSRPPTSKTPEHN 192
R LW PE PW W + + HN
Sbjct: 33 RQGLWAYDNPEKPWEWRKNKRKASEHHN 60
>03_05_0065 + 20450814-20452748
Length = 644
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 146 GDSGGPLLHNRVLVGVCSWGQYCADRRL 63
GD+ G + +N ++ G C GQ A RRL
Sbjct: 74 GDAAGVVAYNAMVAGYCRAGQLAAARRL 101
>01_06_0616 + 30640887-30642314,30642410-30642520,30642587-30642625
Length = 525
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/71 (32%), Positives = 25/71 (35%)
Frame = -1
Query: 226 TDPLTVLSPLTCCALVFWTSVVATSARVTPXXXXXXXXXXXXXXLGDSTALTVACPGVKR 47
TD L V S L VF+TS + A LGDS CP K
Sbjct: 122 TDALDVASELRLPVYVFFTSAASDLAVFLHLTSMRDSINTSFGELGDSMIHIPGCPPFKA 181
Query: 46 SRLPVSPLGSN 14
S LP L N
Sbjct: 182 SELPSDILSDN 192
>12_01_0059 +
494876-494924,496060-496211,496344-496531,496971-497027,
497123-497282,497389-497457,497712-497837,497972-498091
Length = 306
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 118 LWRRGPPESPWHWSR 162
LW G PE PW W R
Sbjct: 279 LWASGNPEKPWDWRR 293
>10_08_0106 + 14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 92 KSRHQRGRGCGGEDHRSHPGTGRDHRR 172
+SR +RG G G H +H G G RR
Sbjct: 1040 RSRERRGGGSDGNHHHNHGGGGGHKRR 1066
>01_05_0612 - 23652121-23652400,23653031-23654427
Length = 558
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 524 GSTFANSGGVVHNVNRII--IHPNYNRRTADSD 432
G T A S ++R++ +HPN NR+T DSD
Sbjct: 64 GITVAFSAAAPPAISRLLFALHPNKNRQTTDSD 96
>10_08_0108 + 14860469-14861032
Length = 187
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 88 PQEQTPTRTRLWRRGPPESPWHWSR 162
P+ P R R WRR +PWH R
Sbjct: 23 PRTTLPLRCRRWRRRRRLAPWHGGR 47
>06_03_0739 + 24004629-24005219
Length = 196
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 575 AAHCPYGDATGRWRIRVGSTFANSGGVVHNVNRIIIH 465
AAH PY + R+ + G +GG + RII H
Sbjct: 160 AAHTPYSECPSRFAVADGEGRVYAGGYAWSPRRIIRH 196
>05_04_0069 - 17639386-17641380
Length = 664
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -3
Query: 587 SILSAAHCPYGDATGRWRIRVGSTFANSGGVVHNV---NRIIIHPNYNRRTADSDLCILR 417
S L AAH +GDA G W + S GV NV N ++ N + R D+ L ++R
Sbjct: 90 SALIAAHASHGDAEGAWGL---LERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVR 146
>02_04_0343 -
22166148-22166318,22166422-22166465,22166563-22166626,
22166729-22167109,22167296-22167475,22167661-22167790,
22167844-22167946,22168060-22168093,22168216-22168300,
22168389-22168453,22168592-22168690,22168960-22169025,
22169200-22169439
Length = 553
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 347 GDNQVVWAAGWGATSLGGSNSEQLRHVQV-WTINQNACVQRYRPINRAITANMLCSGV 177
GD + AAGW A S + E+ R +Q ++ +A +R I R A M+ G+
Sbjct: 7 GDREGKSAAGWTALSTTKTTLEEKRRLQANGSVGGDAGTSGFRRIVRLFFACMVAGGI 64
>10_08_0032 - 14288522-14290465
Length = 647
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 530 RVGSTFANSGGVVH-NVNRIIIHPNYNRRTADSDLCILRSNSNIAY 396
R+G A++ ++ +VN+++IHP R+ + + + +AY
Sbjct: 465 RIGELVASNFSIIGVDVNQVVIHPRLGRKGYEMIIAFMNPEGMLAY 510
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = +1
Query: 91 QEQTPTRTRLWRRGPPESPWHWSRPPTSKTPEH 189
Q+ P ++W + PP P W + P P +
Sbjct: 34 QQYAPPPPQMWGQAPPPPPQMWGQAPPPPQPAY 66
>02_04_0411 + 22670418-22670499,22670708-22671045
Length = 139
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = -3
Query: 167 GGRDQCQGDSGGPLLHNRVLVGVCSWGQYCADR 69
GG D GD GGP H R G C G Y DR
Sbjct: 96 GGGDD--GDCGGPCEHRRCEYGCCE-GGYGGDR 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,507,427
Number of Sequences: 37544
Number of extensions: 544665
Number of successful extensions: 1763
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1762
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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