Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k22r
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0670 + 20562188-20562923,20564288-20564826,20564967-205654...    30   1.4  
09_02_0112 - 4396756-4397406,4397514-4397717                           30   1.9  
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    28   7.7  

>07_03_0670 +
           20562188-20562923,20564288-20564826,20564967-20565458,
           20566803-20567018
          Length = 660

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 623 PPXDASGPSEPGK*GCPSSRPSALSGAGSVQLSSLSXSETRHE 495
           P  + S PS P    CP+ RP A + A S+  S L  + +  E
Sbjct: 4   PAAETSPPSTPSTASCPTPRPDAAAAAPSMSPSLLRAARSGDE 46


>09_02_0112 - 4396756-4397406,4397514-4397717
          Length = 284

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 638 EVHGRPPXDASGPSEPGK*GCPSSRPSALSGAGSVQLS 525
           E+H   P   +G  + GK GCP S PS+++   S  +S
Sbjct: 15  EIHSETP-QLTGAEKKGKMGCPYSMPSSIARHSSFPVS 51


>11_02_0051 +
           7776312-7780228,7780627-7780695,7781920-7781979,
           7782225-7782324,7782720-7782801,7782928-7782940,
           7783621-7783681
          Length = 1433

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 582 GVSQFATVRLVG-GGVGSTFVTLQXRNSARRGYHFNVQIW 466
           G   + T  +VG GG G T +     N  R   HF+V++W
Sbjct: 200 GERNYCTSAIVGHGGAGKTTLAQYIYNDERVVNHFDVRMW 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,801,858
Number of Sequences: 37544
Number of extensions: 295589
Number of successful extensions: 736
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)