BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12k22r (667 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_56576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9 SB_38871| Best HMM Match : DUF590 (HMM E-Value=5.5e-21) 28 5.9 SB_16274| Best HMM Match : PKD (HMM E-Value=3.5) 28 7.9 SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9 SB_10732| Best HMM Match : Collagen (HMM E-Value=0.029) 28 7.9 >SB_56576| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 658 Score = 28.3 bits (60), Expect = 5.9 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = -2 Query: 138 LTLKTLNVITTGVSINGDSI--XELDGRP 58 LT+ T+N+ T G GDSI +DG+P Sbjct: 183 LTMGTINIQTAGSGFRGDSIKRGSIDGKP 211 >SB_38871| Best HMM Match : DUF590 (HMM E-Value=5.5e-21) Length = 319 Score = 28.3 bits (60), Expect = 5.9 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = -1 Query: 652 QAVNVRYTXARR*TRQGRPSPGSRGVPVRDRPPC 551 + V++R T A QGR PG RGV +RD C Sbjct: 96 RGVHIRDTGACISGIQGRVHPGYRGVHIRDTGAC 129 >SB_16274| Best HMM Match : PKD (HMM E-Value=3.5) Length = 351 Score = 27.9 bits (59), Expect = 7.9 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = -2 Query: 138 LTLKTLNVITTGVSINGDSIXE--LDGRP 58 LT+ T+N+ T G GDSI +DG+P Sbjct: 104 LTMGTINIQTAGWGFRGDSIKRGAIDGKP 132 >SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 696 Score = 27.9 bits (59), Expect = 7.9 Identities = 17/36 (47%), Positives = 23/36 (63%) Frame = +3 Query: 351 NLEYKSINKL*YCFLNLKRLSHKQMHMCLTGGQMSL 458 +L+ KS+N L+LK L+HKQ M L GGQ+ L Sbjct: 574 SLKRKSMNTNNELVLDLKALTHKQ--MALKGGQILL 607 >SB_10732| Best HMM Match : Collagen (HMM E-Value=0.029) Length = 367 Score = 27.9 bits (59), Expect = 7.9 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = -2 Query: 138 LTLKTLNVITTGVSINGDSIXE--LDGRP 58 LT+ T+N+ T G GDSI +DG+P Sbjct: 230 LTMGTINIQTAGWGFRGDSIKRGAIDGKP 258 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,211,313 Number of Sequences: 59808 Number of extensions: 339171 Number of successful extensions: 920 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 836 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 916 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1717720750 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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