Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k22r
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_38871| Best HMM Match : DUF590 (HMM E-Value=5.5e-21)                28   5.9  
SB_16274| Best HMM Match : PKD (HMM E-Value=3.5)                       28   7.9  
SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_10732| Best HMM Match : Collagen (HMM E-Value=0.029)                28   7.9  

>SB_56576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 138 LTLKTLNVITTGVSINGDSI--XELDGRP 58
           LT+ T+N+ T G    GDSI    +DG+P
Sbjct: 183 LTMGTINIQTAGSGFRGDSIKRGSIDGKP 211


>SB_38871| Best HMM Match : DUF590 (HMM E-Value=5.5e-21)
          Length = 319

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 652 QAVNVRYTXARR*TRQGRPSPGSRGVPVRDRPPC 551
           + V++R T A     QGR  PG RGV +RD   C
Sbjct: 96  RGVHIRDTGACISGIQGRVHPGYRGVHIRDTGAC 129


>SB_16274| Best HMM Match : PKD (HMM E-Value=3.5)
          Length = 351

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 138 LTLKTLNVITTGVSINGDSIXE--LDGRP 58
           LT+ T+N+ T G    GDSI    +DG+P
Sbjct: 104 LTMGTINIQTAGWGFRGDSIKRGAIDGKP 132


>SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +3

Query: 351 NLEYKSINKL*YCFLNLKRLSHKQMHMCLTGGQMSL 458
           +L+ KS+N      L+LK L+HKQ  M L GGQ+ L
Sbjct: 574 SLKRKSMNTNNELVLDLKALTHKQ--MALKGGQILL 607


>SB_10732| Best HMM Match : Collagen (HMM E-Value=0.029)
          Length = 367

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 138 LTLKTLNVITTGVSINGDSIXE--LDGRP 58
           LT+ T+N+ T G    GDSI    +DG+P
Sbjct: 230 LTMGTINIQTAGWGFRGDSIKRGAIDGKP 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,211,313
Number of Sequences: 59808
Number of extensions: 339171
Number of successful extensions: 920
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)