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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k22r
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35070.1 68417.m04978 expressed protein                             29   3.7  
At5g18180.1 68418.m02134 Gar1 RNA-binding region family protein ...    28   4.9  
At2g02030.1 68415.m00138 F-box family protein contains F-box dom...    28   4.9  
At1g50890.1 68414.m05722 expressed protein                             28   4.9  
At4g01450.2 68417.m00188 nodulin MtN21 family protein similar to...    28   6.4  
At4g01450.1 68417.m00187 nodulin MtN21 family protein similar to...    28   6.4  

>At4g35070.1 68417.m04978 expressed protein 
          Length = 265

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 553 CRGRGRFNFRHSPXQKLGTKRISLQCTNLGTLRLICPPVKHMCICL 416
           C G G  N    P +K+        C + G  R++  P +H+C C+
Sbjct: 197 CGGEGDGN--SLPAKKMKMSSCCCNCGSNGVTRVLFLPCRHLCCCM 240


>At5g18180.1 68418.m02134 Gar1 RNA-binding region family protein
           contains Pfam profile PF04410: Gar1 protein RNA binding
           region
          Length = 189

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -1

Query: 607 QGRPSPGSRG---VPVRDRPPCRGRGRFNFRHSP 515
           Q +   G RG   VP R R P RGRG F  R +P
Sbjct: 133 QPKGQSGGRGEGRVPPRGRGPPRGRGNFRGRGAP 166


>At2g02030.1 68415.m00138 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 334

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
 Frame = -2

Query: 294 LV*LAKRRLETLETYSRQWQRVNLSGYFSK---TIDLARG--LGRSSDSPQTSYSD*LTL 130
           LV L  + L   +T S+ W+ +  S YF K    ++ ++G  L    D       D L L
Sbjct: 48  LVRLPVKSLTRFQTVSKHWRTLITSKYFGKRHMALEKSKGCKLLFVCDDFVDRAEDTLFL 107

Query: 129 KTLNVITTGVSINGDSIXELDGRP*FL 49
           KT+ +  T VS   +   E +G   FL
Sbjct: 108 KTVALEKTSVSEGDEQAFEFEGYKGFL 134


>At1g50890.1 68414.m05722 expressed protein
          Length = 821

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 575 PSSRPSALSGAGSVQLSSLSXSETRHEEDITSMYKFGDAKTH 450
           PSS  SA S   SV +SS S      +  +TS+ + GD  T+
Sbjct: 13  PSSNSSAFSVRSSVAVSSHSAMVELKQRILTSLSRLGDRDTY 54


>At4g01450.2 68417.m00188 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 361

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 578 CPSSRPSALSGAGSVQLSSLSXSETRHEED 489
           CP S    LS  G++Q + LS  +TRH ED
Sbjct: 207 CPYSSTVILSVFGTLQCALLSLIKTRHLED 236


>At4g01450.1 68417.m00187 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 343

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 578 CPSSRPSALSGAGSVQLSSLSXSETRHEED 489
           CP S    LS  G++Q + LS  +TRH ED
Sbjct: 207 CPYSSTVILSVFGTLQCALLSLIKTRHLED 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,587,107
Number of Sequences: 28952
Number of extensions: 233233
Number of successful extensions: 515
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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