BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12k22r (667 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g35070.1 68417.m04978 expressed protein 29 3.7 At5g18180.1 68418.m02134 Gar1 RNA-binding region family protein ... 28 4.9 At2g02030.1 68415.m00138 F-box family protein contains F-box dom... 28 4.9 At1g50890.1 68414.m05722 expressed protein 28 4.9 At4g01450.2 68417.m00188 nodulin MtN21 family protein similar to... 28 6.4 At4g01450.1 68417.m00187 nodulin MtN21 family protein similar to... 28 6.4 >At4g35070.1 68417.m04978 expressed protein Length = 265 Score = 28.7 bits (61), Expect = 3.7 Identities = 13/46 (28%), Positives = 21/46 (45%) Frame = -1 Query: 553 CRGRGRFNFRHSPXQKLGTKRISLQCTNLGTLRLICPPVKHMCICL 416 C G G N P +K+ C + G R++ P +H+C C+ Sbjct: 197 CGGEGDGN--SLPAKKMKMSSCCCNCGSNGVTRVLFLPCRHLCCCM 240 >At5g18180.1 68418.m02134 Gar1 RNA-binding region family protein contains Pfam profile PF04410: Gar1 protein RNA binding region Length = 189 Score = 28.3 bits (60), Expect = 4.9 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%) Frame = -1 Query: 607 QGRPSPGSRG---VPVRDRPPCRGRGRFNFRHSP 515 Q + G RG VP R R P RGRG F R +P Sbjct: 133 QPKGQSGGRGEGRVPPRGRGPPRGRGNFRGRGAP 166 >At2g02030.1 68415.m00138 F-box family protein contains F-box domain Pfam:PF00646 Length = 334 Score = 28.3 bits (60), Expect = 4.9 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 5/87 (5%) Frame = -2 Query: 294 LV*LAKRRLETLETYSRQWQRVNLSGYFSK---TIDLARG--LGRSSDSPQTSYSD*LTL 130 LV L + L +T S+ W+ + S YF K ++ ++G L D D L L Sbjct: 48 LVRLPVKSLTRFQTVSKHWRTLITSKYFGKRHMALEKSKGCKLLFVCDDFVDRAEDTLFL 107 Query: 129 KTLNVITTGVSINGDSIXELDGRP*FL 49 KT+ + T VS + E +G FL Sbjct: 108 KTVALEKTSVSEGDEQAFEFEGYKGFL 134 >At1g50890.1 68414.m05722 expressed protein Length = 821 Score = 28.3 bits (60), Expect = 4.9 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -3 Query: 575 PSSRPSALSGAGSVQLSSLSXSETRHEEDITSMYKFGDAKTH 450 PSS SA S SV +SS S + +TS+ + GD T+ Sbjct: 13 PSSNSSAFSVRSSVAVSSHSAMVELKQRILTSLSRLGDRDTY 54 >At4g01450.2 68417.m00188 nodulin MtN21 family protein similar to MtN21 GI:2598575 (root nodule development) from [Medicago truncatula] Length = 361 Score = 27.9 bits (59), Expect = 6.4 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 578 CPSSRPSALSGAGSVQLSSLSXSETRHEED 489 CP S LS G++Q + LS +TRH ED Sbjct: 207 CPYSSTVILSVFGTLQCALLSLIKTRHLED 236 >At4g01450.1 68417.m00187 nodulin MtN21 family protein similar to MtN21 GI:2598575 (root nodule development) from [Medicago truncatula] Length = 343 Score = 27.9 bits (59), Expect = 6.4 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 578 CPSSRPSALSGAGSVQLSSLSXSETRHEED 489 CP S LS G++Q + LS +TRH ED Sbjct: 207 CPYSSTVILSVFGTLQCALLSLIKTRHLED 236 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,587,107 Number of Sequences: 28952 Number of extensions: 233233 Number of successful extensions: 515 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 505 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 515 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1403159472 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -