Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k22f
         (634 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    23   2.8  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.6  

>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 112 ADPSSTNRANGLSIGSIAPNDRLLRSFV 195
           A+   TN+ + + +  I  NDR+L +++
Sbjct: 19  AENKYTNKYDNVDVDKILNNDRVLTNYI 46


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 305 NWDTPTSRA 279
           +WDTPTS A
Sbjct: 6   DWDTPTSSA 14


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 633 LP*VSFKCLKSTLCKLD*SGITPFKVKRIHLNK 535
           LP ++ K L  T+ K+  + + PF +    LNK
Sbjct: 258 LPDLNHKPLNLTIKKMPIAIVAPFTIVEPKLNK 290


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 633 LP*VSFKCLKSTLCKLD*SGITPFKVKRIHLNK 535
           LP ++ K L  T+ K+  + + PF +    LNK
Sbjct: 150 LPDLNHKPLNLTIKKMPIAIVAPFTIVEPKLNK 182


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,839
Number of Sequences: 336
Number of extensions: 2287
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)