Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k21f
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    84   1e-17
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    31   0.10 
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    27   2.2  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    26   3.9  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   3.9  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   5.1  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    25   6.8  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   6.8  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   9.0  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 83.8 bits (198), Expect = 1e-17
 Identities = 53/130 (40%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
 Frame = +3

Query: 63  VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 239
           + +S+ L W +IR+NN FLVK+       F++EP NV+  ++ R++GL + KAVGV  N 
Sbjct: 1   MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60

Query: 240 DRKGFTVVYKKAKATRKPAKNLIRRPFKAGA-RRSLYK-VKRLLKANHYRTDLCKATLRR 413
            R    +     K  +KPAK L R+   A A  R  YK +   +    YR DL K ++ R
Sbjct: 61  PRGVVLITKTNPKNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVAR 119

Query: 414 ASAILRSQRP 443
           ASAIL SQRP
Sbjct: 120 ASAILSSQRP 129


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 266 VHYCESLPVRVLHDTNSFLVNQAVVPEGVEVSHIVRLLAERLFDIALLH 120
           +HYC S  +  LHDT   LV       G + S +++     + D  L H
Sbjct: 251 IHYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIKKTISLMIDGRLHH 299


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 42  PNTTCSQCVRRQK 4
           PNTTC QC+ R+K
Sbjct: 264 PNTTCPQCMARRK 276


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 127 FFTRNALLLRMIIQFSDDDIFTV*TYFYTKHNVLTMC 17
           FFT ++L     +  S   I     Y Y  HN+LT+C
Sbjct: 449 FFTVSSLFFTRFVNESLIPILRNDYYVYLSHNLLTVC 485


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +3

Query: 102 NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHK-KAVGVVENPDRKGFTVVYKKAK 278
           NN ++L+KK+   K     P+ V     +  NG+  K  A   V  P RK     +   +
Sbjct: 185 NNKSYLLKKKRFLKEVGNSPSAV-YCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGR 243

Query: 279 ATRKPAKNL 305
             +    NL
Sbjct: 244 CNKAEDCNL 252


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 75  SSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLH 182
           S ++ + + NNN ++V + +I+ P+S    +   LH
Sbjct: 415 SQVHSLYLSNNNPYMVLQPDIQSPYSLIAYHANGLH 450


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +1

Query: 400 LPFVVLQPSSAPRGPLKQKRLRQPQPSRNNL 492
           LPF  L   SAP GPL+        P  N L
Sbjct: 67  LPFETLTLDSAPLGPLQFSDAPSMAPENNRL 97


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 206 SQESCWCRGEP*QEGIHSSVQESKGY 283
           S +S W   +P  + IHSSVQE++G+
Sbjct: 2   SNKSAW---QPQFDEIHSSVQEAEGF 24


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 223 PTAFL*IKPLYLKEWRLVTLFGSLLN 146
           PT+F  IKPL  + +R+  L+  LL+
Sbjct: 347 PTSFGKIKPLGFERFRICELYAELLH 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,264
Number of Sequences: 5004
Number of extensions: 40843
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)