Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k21f
         (519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)            81   4e-16
At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unkn...    75   2e-14
At4g17230.1 68417.m02591 scarecrow-like transcription factor 13 ...    29   2.5  
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic...    28   4.3  

>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
          Length = 143

 Score = 81.0 bits (191), Expect = 4e-16
 Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
 Frame = +3

Query: 81  LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 251
           L W I++NNN FLVK   + N K  FSKE NN+TN+HS++++GL +KK V +      + 
Sbjct: 8   LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQA 67

Query: 252 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILR 431
             +   K K   KP  ++ +   K    R    V   +  N+YR DL KA L R SAI +
Sbjct: 68  VVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISK 127

Query: 432 SQR 440
             R
Sbjct: 128 GLR 130


>At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unknown
           protein chromosome II BAC F6F22 - Arabidopsis
           thaliana,PID:g3687251
          Length = 143

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
 Frame = +3

Query: 81  LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 251
           L W I++ NN FLVK   + N K  FSKE NN+ N++S++++GL +KK V +      +G
Sbjct: 8   LIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQG 67

Query: 252 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILR 431
             +   K K   KP  ++ +   K    R    V   +  N+YR DL KA L R SAI +
Sbjct: 68  VVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISK 127

Query: 432 SQR 440
             R
Sbjct: 128 GLR 130


>At4g17230.1 68417.m02591 scarecrow-like transcription factor 13
           (SCL13)
          Length = 287

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 128 AQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRG 232
           +QY   +Q+ A+    PPLL+V  +D  +S + RG
Sbjct: 91  SQYMFLIQELAKHPGGPPLLRVTGVDDSQSTYARG 125


>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
            Nicotiana tabacum, EMBL:AB009883
          Length = 1008

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 24/89 (26%), Positives = 35/89 (39%)
 Frame = +3

Query: 123  KKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKN 302
            K+ + ++   KEP+  T     R N    KKA  V E   RK      KK +  +KP  +
Sbjct: 770  KQSDGEEETQKEPSESTKKERKRKNPESKKKAEAVEEEETRKESVESTKKERKRKKPKHD 829

Query: 303  LIRRPFKAGARRSLYKVKRLLKANHYRTD 389
                P +        K KR  K+    T+
Sbjct: 830  EEEVPNETEKPEKKKKKKREGKSKKKETE 858


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,008,511
Number of Sequences: 28952
Number of extensions: 224570
Number of successful extensions: 548
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)