Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k20r
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0426 - 17573681-17574010,17574163-17574282,17574382-175747... 31 1.2
09_04_0440 - 17605405-17605476,17605558-17605629,17606014-176062... 30 2.1
08_02_0933 + 22740123-22740364,22741952-22742390,22743060-227431... 30 2.1
06_01_0641 - 4652380-4653771,4653850-4654521,4654536-4654707,465... 29 2.8
04_01_0420 - 5561632-5563908 29 2.8
12_02_0090 + 13493311-13494180 29 4.9
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 29 4.9
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 28 6.4
03_01_0046 - 384444-384460,384649-384770,385144-385301,385379-38... 28 6.4
02_05_1347 + 35837967-35838060,35838524-35838783 28 8.5
>11_04_0426 -
17573681-17574010,17574163-17574282,17574382-17574754,
17575051-17575087,17575821-17575872
Length = 303
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/72 (33%), Positives = 33/72 (45%)
Frame = -1
Query: 659 ASTQTFDEQTEINARQERLVTNQVASAIENIRKQIREAGFDPLDVDRREIVIPPEEDFHA 480
A+T T D+ +E +V SA ++ K RE P+DV+ PPEED A
Sbjct: 229 AATATGDDDHSAAGVKEHVVNIAKLSAAVDVVKT-REV--HPVDVESPPAEAPPEEDDKA 285
Query: 479 LAAFAEDIKSTG 444
AA A + G
Sbjct: 286 AAATAAAVAGAG 297
>09_04_0440 -
17605405-17605476,17605558-17605629,17606014-17606277,
17607106-17607510
Length = 270
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 36 DYLKQGIFQKPVDCGPVIGNSGWHGL*EEVSDGVGEV 146
D L+ I +KP + P GW G EV DG GEV
Sbjct: 82 DDLRVLISEKPAEPAPA-KREGWEGFGREVGDGDGEV 117
>08_02_0933 +
22740123-22740364,22741952-22742390,22743060-22743172,
22743470-22743575
Length = 299
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 117 EEVSDGVGEVASKQINI*IRLNSS*GKVYIETPNRNSGDDADAYTHFSTNTKVV--YGGT 290
EE +DGV E +Q+N I + S V + PNR D D T T+ + +GG+
Sbjct: 218 EEGNDGVAEGILEQVNSTIFILKSGLGVGRKRPNRKDRDRKDRDQEIRTETEAMGRHGGS 277
Query: 291 STG 299
+G
Sbjct: 278 GSG 280
>06_01_0641 -
4652380-4653771,4653850-4654521,4654536-4654707,
4655515-4655690
Length = 803
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +3
Query: 213 PNRNSGDDADAYTHFSTNTKVVYGGTSTGASVAFVIEHIKLNTGSTDASFNTR*TQD*VE 392
P R S A++Y H ++ +GG S G + +H + ST +SF + D VE
Sbjct: 292 PARLSAASAESYDHSFETSRTPWGGDSFGGN-----DHTSFSQSST-SSFCSIGMDD-VE 344
Query: 393 TGAKDAKI-VSDNDDVA*SSAFDVLGESGKCMEVFLWR 503
T K ++ + D+ ++ + L K ME+ W+
Sbjct: 345 TEMKRLRLELKQTMDMYSTACKEALNAKQKAMELQRWK 382
>04_01_0420 - 5561632-5563908
Length = 758
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 605 LVTNQVASAIENIRKQIREAGFDPLDVDRREIVIPP 498
LVT A+ + R+ G PL+V R E+V PP
Sbjct: 661 LVTLTAAAPVATARRTATNIGKQPLEVYRAEVVAPP 696
>12_02_0090 + 13493311-13494180
Length = 289
Score = 28.7 bits (61), Expect = 4.9
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = -2
Query: 352 SVLPVLSLMCSITKATLAPVDVPP*TTFVLVLKCV*ASASSPEFLLGVSI*TLP*EELR- 176
SV P+LS++ + T + + +T VL + +SAS+P F S T P +
Sbjct: 126 SVNPILSIIGVPSPTTTSSLATTTTSTAVLFPRSTLSSASTPSFTTTSSPVTAPKSSTKY 185
Query: 175 RI*MLICLDATSPTPSLTSSHRPCQPLLPITGPQSTGF 62
+ I L P T+S PC +PI+ ++ F
Sbjct: 186 TVATEIVLSPVFPPSCQTTS--PCTGGMPISANRNVAF 221
>02_05_0226 + 26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -2
Query: 619 HVKSAWSLTRLLPPSKISESK*EKPDSIHWTLIEEKLSSLQRKTSM 482
H +++S++ L+PPSK+ K EK S I E+L R T +
Sbjct: 1056 HAPASYSISYLIPPSKVDNDK-EKGVSSGRKSISERLDDEVRDTKI 1100
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 177 LNSS*GKVYIETP-NRNSGDDADAYTHFSTNTKVVYGGTSTGASVAFVIEHIKLNT 341
L+SS K ++ P +RNSGDD + H KV+ + +F +H K T
Sbjct: 236 LSSSFQKEQVKRPISRNSGDDISSSFHKEQGRKVISRNSENDRVASFHKQHDKRPT 291
>03_01_0046 -
384444-384460,384649-384770,385144-385301,385379-385479,
385748-385823,385983-386093,386165-386356,386729-387024,
388299-388497
Length = 423
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +3
Query: 486 EVFLWRDDNFSSINVQWIESGFSYLLSDIFDGGSNLVSDQALLTCVYLRLFIKSLCTGTS 665
++F+W NF +N Q ++S Y+ FDG V ++ + C + I TG+S
Sbjct: 76 QLFIWFQFNFI-VNSQALKS---YIWLQCFDGSIQQVEEEVAMFCPMICREIVKNGTGSS 131
Query: 666 QN 671
+N
Sbjct: 132 KN 133
>02_05_1347 + 35837967-35838060,35838524-35838783
Length = 117
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 148 ATSPTPSLTSSHRPCQPLLPITGPQST 68
A SPT L+SSH+PC+ L T T
Sbjct: 2 AASPTRLLSSSHQPCKESLHCTATGRT 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,084,260
Number of Sequences: 37544
Number of extensions: 366135
Number of successful extensions: 1015
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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