Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k20f
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    30   0.31 
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    28   0.94 
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   2.2  
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    26   3.8  
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.8  

>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 49  LTAILACASTQTFDEQTEINARQERLVTNQVASAIENIRKQIRE 180
           LTA L C     FD  T  N    R++    +S + N   ++RE
Sbjct: 142 LTADLLCVHANDFDFDTSTNTTNGRILARNASSLLMNSTDKVRE 185


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 492 ADAYTHFSTNTKVVYGGTSTGASVAFVIEHIKLNTGSTD 376
           A + THFST + +  GGTS    +   ++ + L+ G  D
Sbjct: 254 ASSVTHFSTPSMLPIGGTSLDDELLAPVDDLNLDLGLDD 292


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 22/94 (23%), Positives = 38/94 (40%)
 Frame = +1

Query: 85  FDEQTEINARQERLVTNQVASAIENIRKQIREAGFDPLDVDRREIVIPPEEDFHALAAFA 264
           FD+ T I  +  +     V S + N    +R +G DP  +D  ++     E  HA+ +  
Sbjct: 498 FDDATNIRVKDNKRYQIPVISLLCNF---VRSSGMDPTFLDLWDVKTLFHEMGHAMHSIL 554

Query: 265 EDIKSTGLSNIVIITNNFSILSARLNLVLSLPRV 366
              K   L+     T+   + S  +   +S P V
Sbjct: 555 GHTKYQNLAGTRCATDFVELPSIIMEFFMSNPAV 588


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 534 KVYIETPNRNSGDDADAYTHFSTNTKVVY 448
           K+YI  PN  S +DA+++T       +VY
Sbjct: 201 KLYINQPNNLSFEDAESFTPTQVIEDIVY 229


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 53  PQFWLVPVHKLLMNR 97
           P+ WL+P H+ L NR
Sbjct: 64  PRAWLIPFHEFLNNR 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,510
Number of Sequences: 5004
Number of extensions: 44961
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)