Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k20f
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10730.1 68417.m01753 protein kinase family protein contains ...    32   0.26 
At3g53470.2 68416.m05903 expressed protein ribosomal protein S25...    31   0.61 
At3g53470.1 68416.m05902 expressed protein ribosomal protein S25...    31   0.61 
At5g10250.1 68418.m01190 phototropic-responsive protein, putativ...    31   0.81 
At5g40740.1 68418.m04944 expressed protein                             29   2.5  
At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138...    28   5.7  
At3g07400.1 68416.m00882 lipase class 3 family protein contains ...    28   5.7  

>At4g10730.1 68417.m01753 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 708

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
 Frame = +1

Query: 103 INARQERLVTNQVASAIENIRKQIREA-GFD-PLDVDRREIVIPPEEDFHALAAFAEDIK 276
           IN+  E++   + + +   ++  +R A  F  PL++  R           +   F + I 
Sbjct: 483 INSDSEKVHGYERSESERQLKSSVRRAPSFSGPLNLPNRASANSLSAPIKSSGGFRDSID 542

Query: 277 STGLSNIVIITNNFSILSARLNLVLSLP-RVEASVG 381
               +N+V I   FS+ S  L+L  + P R  ASVG
Sbjct: 543 DKSKANVVQIKGRFSVTSENLDLARASPLRKSASVG 578


>At3g53470.2 68416.m05903 expressed protein ribosomal protein S25,
           cytosolic, Arabidopsis thaliana, PIR:T08568
          Length = 136

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +1

Query: 148 AIENIRKQIREAGFDPLDVDRREIVIPPEEDFHALAAFAEDIKSTGLSNIVIITN-NFSI 324
           A +N +KQ +++ F   +VD+     PP  +F  L+   + IK T  SN+++ T+  F++
Sbjct: 58  AWKNFKKQSKKSLFSQFNVDKYVTWNPPRSEFD-LSEEVDPIKRTERSNLMLWTSPRFTL 116

Query: 325 LSA 333
           + A
Sbjct: 117 VGA 119


>At3g53470.1 68416.m05902 expressed protein ribosomal protein S25,
           cytosolic, Arabidopsis thaliana, PIR:T08568
          Length = 135

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +1

Query: 148 AIENIRKQIREAGFDPLDVDRREIVIPPEEDFHALAAFAEDIKSTGLSNIVIITN-NFSI 324
           A +N +KQ +++ F   +VD+     PP  +F  L+   + IK T  SN+++ T+  F++
Sbjct: 57  AWKNFKKQSKKSLFSQFNVDKYVTWNPPRSEFD-LSEEVDPIKRTERSNLMLWTSPRFTL 115

Query: 325 LSA 333
           + A
Sbjct: 116 VGA 118


>At5g10250.1 68418.m01190 phototropic-responsive protein, putative
           similar to root phototropism RPT2 [Arabidopsis thaliana]
           gi|6959488|gb|AAF33112, a signal transducer of
           phototropic response PMID:10662859
          Length = 607

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -1

Query: 219 NFSSINVQWIESGFSYL-LSDIFDGGSNLVSDQALLTCVYLRLFIKSLCTGTS-QNCGEN 46
           + + +NV  +     YL +++ F+ G+ +   +A +T V L  +  +L    S  N    
Sbjct: 118 DLNPLNVAPLRCASEYLYMTEEFEAGNLISKTEAFITFVVLASWRDTLTVLRSCTNLSPW 177

Query: 45  NENLHDVRACCKMIA 1
            ENL  VR CC ++A
Sbjct: 178 AENLQIVRRCCDLLA 192


>At5g40740.1 68418.m04944 expressed protein
          Length = 741

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 73  STQTFDEQTEINARQERLVTNQVASAIENIRKQIREA 183
           S +   +Q   NAR + L T+  +S + N++K +REA
Sbjct: 554 SEKNSTDQALSNARPDNLPTDTSSSFVHNLKKSVREA 590


>At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 677

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +2

Query: 44  LFSPQFWLVPVHKLLMNRRR*THVKSAWSLTRLL-PPSKISESK*EKPDSIHWTLIEEKL 220
           +F  Q  L+P+H +  N    T + ++W L ++    +K ++ K   P SI    +E K 
Sbjct: 363 VFGGQRTLIPLHGMFENVVDRTSLSTSWELAKMYGREAKHNDIKKMTPPSIE---VETKH 419

Query: 221 SSLQRKTSMHLPLSP 265
            SL+       PL P
Sbjct: 420 DSLKSTRQRPQPLPP 434


>At3g07400.1 68416.m00882 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 1003

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 247 ALAAFAEDIKSTGLSNIVIITNNFSI 324
           ALA   +++KS G+  ++ ITN FS+
Sbjct: 818 ALALLLDEVKSLGIPWVLAITNKFSV 843


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,392,838
Number of Sequences: 28952
Number of extensions: 240654
Number of successful extensions: 661
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)