Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k19r
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    42   9e-05
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    42   9e-05

>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 995

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
 Frame = -2

Query: 726  QFSVGNDLLIVPNLXPSQSHVHVWLPSES---WYELWSGLKIEGNVGDAVXMTTTESDFL 556
            QF VG+ LL+ P L P+  +V    P ++   WY+ +    I     + + ++   +   
Sbjct: 795  QFMVGSALLVTPVLEPNVDYVRGVFPGDNSTIWYDWYDHKVIYRQHNENITLSAPLTHIN 854

Query: 555  TMVRAGSIIVLQKDVTLTAVDTRLRSQYSLTIAL 454
              +R G+II +QK  +LT  +T+ ++ Y L +AL
Sbjct: 855  VAIRGGNIIPMQKP-SLTTHETK-QNPYDLLVAL 886


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 969

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
 Frame = -2

Query: 726  QFSVGNDLLIVPNLXPSQSHVHVWLPSES---WYELWSGLKIEGNVGDAVXMTTTESDFL 556
            QF VG+ LL+ P L P+  +V    P ++   WY+ ++  +I     + V +        
Sbjct: 773  QFMVGDSLLVTPVLEPNVEYVQGVFPGDNSTVWYDWYNHTEIVRQYNENVTLYAPLEHIN 832

Query: 555  TMVRAGSIIVLQKDVTLTAVDTRLRSQYSLTIAL 454
              +R GS++ +Q+  +LT  ++R ++ ++L +AL
Sbjct: 833  VAIRGGSVLPMQQP-SLTTYESR-QNPFNLLVAL 864


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,517
Number of Sequences: 5004
Number of extensions: 33781
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)