Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k19r
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0524 + 18321110-18323978,18324098-18324576                       33   0.18 
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170...    33   0.18 
12_01_0622 + 5124213-5125292,5126820-5128685                           28   6.6  
07_03_0394 - 17633753-17636788                                         28   6.6  
03_06_0102 + 31656268-31656304,31656625-31656920,31657967-31658080     28   6.6  

>09_04_0524 + 18321110-18323978,18324098-18324576
          Length = 1115

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -2

Query: 690 NLXPSQSHVHVWLPSESWYELWSGLKIEGNVGDAVXMTTTESDFLTMVRAGSIIVLQKDV 511
           +L PS   +  W  S++    W G+  +   GD V +T T  D    + A S++ L + +
Sbjct: 51  SLRPSGGALDSWRASDATPCRWLGVSCDARTGDVVGVTVTSVDLQGPLPAASLLPLARSL 110

Query: 510 -TLTAVDTRLRSQ 475
            TL    T L  +
Sbjct: 111 RTLVLSGTNLTGE 123


>01_01_0195 +
           1697447-1697691,1698150-1698808,1699754-1701570,
           1701700-1701771
          Length = 930

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = -2

Query: 729 TQFSVGNDLLIVPNLXPSQSHVHVWLPSESWYELWSGLKIEGNVGD-AVXMTTTESDFLT 553
           TQ+ +G  +++ P L    + V    P  SWY L+   K+  + G+ AV +    ++   
Sbjct: 697 TQYLLGASVMVSPVLEQGATSVSAMFPPGSWYNLFDTTKVVVSRGEGAVKLDAPLNEINV 756

Query: 552 MVRAGSIIVLQKDVTLT 502
            V   +I+ +Q+  T++
Sbjct: 757 HVFQNTILPMQRGGTIS 773


>12_01_0622 + 5124213-5125292,5126820-5128685
          Length = 981

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 654 LPSESWYELWSGLKIEGNVGDAVXMTTTESD 562
           L  E W ++W  LK   N G  V +TT   D
Sbjct: 296 LSQEEWDQIWQVLKPLNNKGSVVIVTTRRKD 326


>07_03_0394 - 17633753-17636788
          Length = 1011

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 207 IFKADDKSLTIQAEGEDFDILCKPSGA 127
           +F  DD S+ + A G++FD +  P+ A
Sbjct: 127 VFLTDDPSVRVSAPGQEFDFISTPTTA 153


>03_06_0102 + 31656268-31656304,31656625-31656920,31657967-31658080
          Length = 148

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 708 DLLIVPNLXPSQSHVHVWLPSESWYEL 628
           +L I+ N+ P Q  + VW P + W EL
Sbjct: 90  ELSILANIEPKQK-IKVWFPKQKWKEL 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,111,451
Number of Sequences: 37544
Number of extensions: 199267
Number of successful extensions: 353
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)