Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k19r
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-5|AAO91743.1|  936|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical pr...    34   0.12 
AF026208-3|AAB71267.3|  903|Caenorhabditis elegans Hypothetical ...    32   0.48 
U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical p...    31   0.64 
Z73906-16|CAA98123.1|  722|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z72516-4|CAA96690.1|  722|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U70848-3|AAB09111.2|  399|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U40800-5|AAO91743.1|  936|Caenorhabditis elegans Hypothetical
           protein D2096.3 protein.
          Length = 936

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
 Frame = -2

Query: 726 QFSVGNDLLIVPNLXPSQSHVHVWLPSESWYELWS---GLKIEGNVGDAVXMTTTESDFL 556
           QF  G+ L+I P L   Q+ VH + PS++WY L     G K+     D     ++ +   
Sbjct: 718 QFLWGSALMIAPALYQGQTSVHAYFPSDTWYSLQPETYGQKMFSGFNDVNAPLSSLTP-- 775

Query: 555 TMVRAGSIIVLQKDVTLTAVDTRLRSQYSLTIALK 451
             VR G ++  Q   T T   +RL S + L I +K
Sbjct: 776 VFVRGGFVLPRQSPGTTTTA-SRL-SPFELLITVK 808


>Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical
           protein F53F4.8 protein.
          Length = 856

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
 Frame = -2

Query: 726 QFSVGNDLLIVPNLXPSQSHVHVWLPSESWYELWS---GLKIEGNVGDAVXMTTTESDFL 556
           QF  G+ +L+ P +        ++LP++ WY L++   G +I+   G     + T S   
Sbjct: 646 QFMWGSGILVAPVVYQGAVSTSLYLPNDVWYSLFNYMYGSRID--PGFITVPSPTTSRIP 703

Query: 555 TMVRAGSIIVLQKDVTLTAVDTRLRSQYSLTIA 457
             VR G +I  Q   T T + +RL + + L IA
Sbjct: 704 VFVRGGYVIPRQTPTTTTTM-SRL-NPFELLIA 734


>AF026208-3|AAB71267.3|  903|Caenorhabditis elegans Hypothetical
           protein F52D1.1 protein.
          Length = 903

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -2

Query: 726 QFSVGNDLLIVPNLXPSQSHVHVWLPS--ESWYELWSGLKIEGNVGDAVXMTTTESDFLT 553
           Q+ VGN LL+ P L      + ++LP   + WY+ W   K   + G AV +    +    
Sbjct: 697 QWMVGNGLLVKPVLEEKVKELSIYLPGKRQVWYD-WETHKARPSPG-AVQIPAELNTIGL 754

Query: 552 MVRAGSIIVLQKDVTLT 502
             R G+II    +V LT
Sbjct: 755 YHRGGTIIPKLSEVKLT 771


>U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical
           protein R05F9.12 protein.
          Length = 955

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
 Frame = -2

Query: 726 QFSVGNDLLIVPNLXPSQSHVHVWLPSESWYELWS-GLKIEGNVGDAVXMTTTESDFLTM 550
           +F  G+ +L+ P +    + V+ +LP++ WY L+        + G A     T S     
Sbjct: 713 EFMWGSRILVAPVIYQGTTSVNAYLPTDRWYSLFDYRYGSIMSPGYATVPAPTTSRIPVF 772

Query: 549 VRAGSIIVLQKDVTLTAVDTRLRSQYSLTIA 457
           VR  S+I  Q   ++T   TR  + + L IA
Sbjct: 773 VRGYSVIPRQTP-SITTTATR-SNPFELLIA 801


>Z73906-16|CAA98123.1|  722|Caenorhabditis elegans Hypothetical
           protein T25G3.4 protein.
          Length = 722

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 183 LTIQAEGEDFDILCKPSGALWANVIREIILYGLNADLNNFDNF 55
           LT  ++GE+FD+L    GA  A V  +    GL   L   D+F
Sbjct: 66  LTNLSKGEEFDVLIIGGGATGAGVALDAQTRGLKTALVELDDF 108


>Z72516-4|CAA96690.1|  722|Caenorhabditis elegans Hypothetical
           protein T25G3.4 protein.
          Length = 722

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 183 LTIQAEGEDFDILCKPSGALWANVIREIILYGLNADLNNFDNF 55
           LT  ++GE+FD+L    GA  A V  +    GL   L   D+F
Sbjct: 66  LTNLSKGEEFDVLIIGGGATGAGVALDAQTRGLKTALVELDDF 108


>U70848-3|AAB09111.2|  399|Caenorhabditis elegans Hypothetical
           protein C43G2.4 protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 183 LTIQAEGEDFDILCKPSGALWANVIREIILY 91
           +TI   G  F +L +  G++W +V RE+ L+
Sbjct: 1   MTISYSGNFFRLLLRWKGSIWRSVWRELFLF 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,926,226
Number of Sequences: 27780
Number of extensions: 191152
Number of successful extensions: 401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)