Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k19r
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical t...    46   3e-05
At1g62280.1 68414.m07026 C4-dicarboxylate transporter/malic acid...    28   7.3  

>At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical to
           alpha-glucosidase 1 [Arabidopsis thaliana] GI:2323344
          Length = 902

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
 Frame = -2

Query: 729 TQFSVGNDLLIVPNLXPSQSHVHVWLPSESWYELWS-GLKIEGNVGDAVXMTTTESDFLT 553
           +QF +G  +++ P L      V  + P+ +W++L++    + G+ G  V + T       
Sbjct: 683 SQFLIGKSIMVSPALKQGAVAVDAYFPAGNWFDLFNYSFAVGGDSGKHVRLDTPADHVNV 742

Query: 552 MVRAGSIIVLQKDVTLTAVDTRLRSQYSLTIALKCSN 442
            VR GSI+ +Q +  LT  D R      L +A +  N
Sbjct: 743 HVREGSIVAMQGE-ALTTRDARKTPYQLLVVASRLEN 778


>At1g62280.1 68414.m07026 C4-dicarboxylate transporter/malic acid
           transport family protein contains Pfam profile PF03595:
           C4-dicarboxylate transporter/malic acid transport
           protein
          Length = 385

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 705 LLIVPNLXPSQSHVHVWLPSESWYELW 625
           ++I P   PS SH+H  LPS +++ LW
Sbjct: 61  IMIAPE-SPSMSHMHSKLPSMAFHLLW 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,010,535
Number of Sequences: 28952
Number of extensions: 171046
Number of successful extensions: 352
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)