Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k19f
         (601 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.85 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.6  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   7.9  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   7.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -2

Query: 204 SFLVFKFIIIFLSLVQRFWCVRYHISCLF 118
           +F++F   ++FL  +  F+C    + C++
Sbjct: 271 AFIIFTMHLLFLLCIYYFYCALIILLCIY 299



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 204 SFLVFKFIIIFLSLVQRFWC 145
           +F++F   ++FL  +  F+C
Sbjct: 152 AFIIFTVHLLFLLCIYHFFC 171


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +2

Query: 452 EAKLASIDSHQGSPTSWIECGTKT 523
           E K  +     G PT W EC   T
Sbjct: 870 EYKCVTCKCENGKPTCWRECDKAT 893


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/24 (29%), Positives = 10/24 (41%)
 Frame = +1

Query: 394 CGYANVNSEQCHPHCCYDFRSKTC 465
           C     +  QC P   YD  ++ C
Sbjct: 114 CWNGEASRYQCSPGLAYDREARVC 137


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/24 (29%), Positives = 10/24 (41%)
 Frame = +1

Query: 394 CGYANVNSEQCHPHCCYDFRSKTC 465
           C     +  QC P   YD  ++ C
Sbjct: 114 CWNGEASRYQCSPGLAYDREARVC 137


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,877
Number of Sequences: 336
Number of extensions: 2748
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)