Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k19f
(601 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U25657-1|AAA83628.1| 80|Homo sapiens intestinal trefoil factor... 33 0.58
L15203-1|AAA59981.1| 80|Homo sapiens secretory protein protein. 33 0.58
L08044-1|AAA36766.1| 74|Homo sapiens intestinal trefoil factor... 33 0.58
BC017859-1|AAH17859.1| 73|Homo sapiens TFF3 protein protein. 33 0.58
AP001746-2|BAA95531.1| 73|Homo sapiens trefoil factor 3, HITF,... 33 0.58
AB038162-3|BAB13731.1| 73|Homo sapiens trefoil factor 3 protein. 33 0.58
X51698-1|CAA35995.1| 130|Homo sapiens spasmolytic polypeptide p... 30 5.4
U47292-1|AAB05397.1| 129|Homo sapiens spasmolytic peptide protein. 30 5.4
BC032820-1|AAH32820.1| 129|Homo sapiens trefoil factor 2 (spasm... 30 5.4
AB038162-2|BAB13730.1| 129|Homo sapiens trefoil factor 2 protein. 30 5.4
>U25657-1|AAA83628.1| 80|Homo sapiens intestinal trefoil factor
protein.
Length = 80
Score = 33.5 bits (73), Expect = 0.58
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 346 GFSFGSCLVARTLRLPCGYANVNSEQCHPH-CCYDFR 453
G S C V R+ CGY +V ++C+ CC+D R
Sbjct: 26 GLSANQCAVPAKDRVDCGYPHVTPKECNNRGCCFDSR 62
>L15203-1|AAA59981.1| 80|Homo sapiens secretory protein protein.
Length = 80
Score = 33.5 bits (73), Expect = 0.58
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 346 GFSFGSCLVARTLRLPCGYANVNSEQCHPH-CCYDFR 453
G S C V R+ CGY +V ++C+ CC+D R
Sbjct: 26 GLSANQCAVPAKDRVDCGYPHVTPKECNNRGCCFDSR 62
>L08044-1|AAA36766.1| 74|Homo sapiens intestinal trefoil factor
protein.
Length = 74
Score = 33.5 bits (73), Expect = 0.58
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 346 GFSFGSCLVARTLRLPCGYANVNSEQCHPH-CCYDFR 453
G S C V R+ CGY +V ++C+ CC+D R
Sbjct: 19 GLSANQCAVPAKDRVDCGYPHVTPKECNNRGCCFDSR 55
>BC017859-1|AAH17859.1| 73|Homo sapiens TFF3 protein protein.
Length = 73
Score = 33.5 bits (73), Expect = 0.58
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 346 GFSFGSCLVARTLRLPCGYANVNSEQCHPH-CCYDFR 453
G S C V R+ CGY +V ++C+ CC+D R
Sbjct: 19 GLSANQCAVPAKDRVDCGYPHVTPKECNNRGCCFDSR 55
>AP001746-2|BAA95531.1| 73|Homo sapiens trefoil factor 3, HITF,
human intestinal trefoil factor protein.
Length = 73
Score = 33.5 bits (73), Expect = 0.58
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 346 GFSFGSCLVARTLRLPCGYANVNSEQCHPH-CCYDFR 453
G S C V R+ CGY +V ++C+ CC+D R
Sbjct: 19 GLSANQCAVPAKDRVDCGYPHVTPKECNNRGCCFDSR 55
>AB038162-3|BAB13731.1| 73|Homo sapiens trefoil factor 3 protein.
Length = 73
Score = 33.5 bits (73), Expect = 0.58
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 346 GFSFGSCLVARTLRLPCGYANVNSEQCHPH-CCYDFR 453
G S C V R+ CGY +V ++C+ CC+D R
Sbjct: 19 GLSANQCAVPAKDRVDCGYPHVTPKECNNRGCCFDSR 55
>X51698-1|CAA35995.1| 130|Homo sapiens spasmolytic polypeptide
protein.
Length = 130
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = +1
Query: 385 RLPCGYANVNSEQCHPH-CCYDFRSKT----CFHRFPSRFS 492
R CG+ + S+QC + CC+D S T CFH P + S
Sbjct: 40 RTNCGFPGITSDQCFDNGCCFD-SSVTGVPWCFHPLPKQES 79
>U47292-1|AAB05397.1| 129|Homo sapiens spasmolytic peptide protein.
Length = 129
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = +1
Query: 385 RLPCGYANVNSEQCHPH-CCYDFRSKT----CFHRFPSRFS 492
R CG+ + S+QC + CC+D S T CFH P + S
Sbjct: 39 RTNCGFPGITSDQCFDNGCCFD-SSVTGVPWCFHPLPKQES 78
>BC032820-1|AAH32820.1| 129|Homo sapiens trefoil factor 2
(spasmolytic protein 1) protein.
Length = 129
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = +1
Query: 385 RLPCGYANVNSEQCHPH-CCYDFRSKT----CFHRFPSRFS 492
R CG+ + S+QC + CC+D S T CFH P + S
Sbjct: 39 RTNCGFPGITSDQCFDNGCCFD-SSVTGVPWCFHPLPKQES 78
>AB038162-2|BAB13730.1| 129|Homo sapiens trefoil factor 2 protein.
Length = 129
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = +1
Query: 385 RLPCGYANVNSEQCHPH-CCYDFRSKT----CFHRFPSRFS 492
R CG+ + S+QC + CC+D S T CFH P + S
Sbjct: 39 RTNCGFPGITSDQCFDNGCCFD-SSVTGVPWCFHPLPKQES 78
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,108,688
Number of Sequences: 237096
Number of extensions: 1488261
Number of successful extensions: 2586
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2573
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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