Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k19f
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60030.1 68416.m06704 squamosa promoter-binding protein-like ...    28   4.1  
At4g21740.1 68417.m03147 expressed protein                             28   5.4  
At5g10120.1 68418.m01172 ethylene insensitive 3 family protein c...    27   9.5  

>At3g60030.1 68416.m06704 squamosa promoter-binding protein-like 12
           (SPL12) identical to squamosa promoter binding
           protein-like 12 [Arabidopsis thaliana] GI:6006395;
           contains Pfam profiles PF03110: SBP domain, PF00023:
           Ankyrin repeat
          Length = 927

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 219 PSDLFSFLVFKFIIIFLSLVQRFWC 145
           P DLFS + FKF+I F   + R WC
Sbjct: 666 PEDLFSLIRFKFLIEF--SMDREWC 688


>At4g21740.1 68417.m03147 expressed protein 
          Length = 156

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 137 IIFHVCFLFRYRNYNHTN 84
           ++F + + FRYR +NH+N
Sbjct: 127 VVFTLIYFFRYRKHNHSN 144


>At5g10120.1 68418.m01172 ethylene insensitive 3 family protein
           contains Pfam profile: PF04873 ethylene insensitive 3
          Length = 471

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +1

Query: 151 KPLNETQEDDYEFEYEKTKQIRWYDKILLNRPIK 252
           +PL+   +++ E  Y+  K+  W D+ L+ + +K
Sbjct: 8   EPLSPMDDEEEEISYDDLKRRMWKDRNLMEKKLK 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,196,416
Number of Sequences: 28952
Number of extensions: 234396
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)