Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k18r
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05030.1 68415.m00525 hypothetical protein 32 0.35
At5g01840.1 68418.m00103 ovate family protein 59% similar to ova... 30 1.9
At2g36250.2 68415.m04450 chloroplast division protein FtsZ (FtsZ... 29 2.5
At2g36250.1 68415.m04449 chloroplast division protein FtsZ (FtsZ... 29 2.5
At5g47140.1 68418.m05811 zinc finger (GATA type) family protein ... 29 4.3
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ... 29 4.3
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein 29 4.3
At2g48020.2 68415.m06011 sugar transporter, putative similar to ... 28 5.7
At2g48020.1 68415.m06010 sugar transporter, putative similar to ... 28 5.7
At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to ... 28 7.6
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con... 28 7.6
At2g17240.1 68415.m01991 expressed protein 28 7.6
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 28 7.6
At5g67300.1 68418.m08486 myb family transcription factor contain... 27 10.0
At5g01280.1 68418.m00037 expressed protein 27 10.0
At3g24506.1 68416.m03075 expressed protein 27 10.0
>At2g05030.1 68415.m00525 hypothetical protein
Length = 205
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 72 SDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQS 194
S G+RS +P+S G +DHR G +DHRR + Q+
Sbjct: 65 SSGERS-LPRSSTSTDDRVGYQDHRRDQGQDQDHRRDQQQN 104
>At5g01840.1 68418.m00103 ovate family protein 59% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 270
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +2
Query: 11 FYELDWIQEVKRETRTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTP 190
FY+L + + K++ P S + TPT T PP P H S+ P S P
Sbjct: 18 FYKLRDMSKSKKKNLQSQPNSTTSKKKHHAVPTPTSTTPLSPRPPRRPSHSSKAPPSHPP 77
>At2g36250.2 68415.m04450 chloroplast division protein FtsZ
(FtsZ2-1) identical to chloroplast division protein
AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
division protein FtsZ [Arabidopsis thaliana] GI:14195704
Length = 478
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -2
Query: 375 AGANYNLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRPI---NRAITA 205
A +NYN +V+ G G+ ++ ++ V+ W +N + R P+ NR
Sbjct: 112 APSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPVLPDNRLQIG 171
Query: 204 NMLCSGVLDVGGRDQ 160
L G L GG +
Sbjct: 172 KELTRG-LGAGGNPE 185
>At2g36250.1 68415.m04449 chloroplast division protein FtsZ
(FtsZ2-1) identical to chloroplast division protein
AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
division protein FtsZ [Arabidopsis thaliana] GI:14195704
Length = 478
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -2
Query: 375 AGANYNLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRPI---NRAITA 205
A +NYN +V+ G G+ ++ ++ V+ W +N + R P+ NR
Sbjct: 112 APSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPVLPDNRLQIG 171
Query: 204 NMLCSGVLDVGGRDQ 160
L G L GG +
Sbjct: 172 KELTRG-LGAGGNPE 185
>At5g47140.1 68418.m05811 zinc finger (GATA type) family protein
contains Pfam:PF00320 GATA zinc finger domain
Length = 470
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 68 GKRRSAQYCPQEQTPTRTRLWRRGPPESP 154
GK+ +C TP LWR GPPE P
Sbjct: 2 GKQGPCYHCGVTSTP----LWRNGPPEKP 26
>At5g03360.1 68418.m00289 DC1 domain-containing protein contains Pfam
profile PF03107: DC1 domain
Length = 1610
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 108 HQRGRGCGGEDHRSHPGTGRDHRRPKH 188
H R RGC GE+H+ + D + P H
Sbjct: 1223 HFRCRGCNGENHKGYEQAPVDVKHPLH 1249
>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
Length = 510
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 68 GKRRSAQYCPQEQTPTRTRLWRRGPPESP 154
GK+ +C TP LWR GPPE P
Sbjct: 2 GKQGPCYHCGVTNTP----LWRNGPPEKP 26
>At2g48020.2 68415.m06011 sugar transporter, putative similar to
ERD6 protein {Arabidopsis thaliana} GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 463
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 729 PTNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCG 616
P N + + GG T +N + G A+ YT+N+ W S G
Sbjct: 390 PINIKGVAGGMATLVNWF-GAWAVSYTFNFLMSWSSYG 426
>At2g48020.1 68415.m06010 sugar transporter, putative similar to
ERD6 protein {Arabidopsis thaliana} GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 463
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 729 PTNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCG 616
P N + + GG T +N + G A+ YT+N+ W S G
Sbjct: 390 PINIKGVAGGMATLVNWF-GAWAVSYTFNFLMSWSSYG 426
>At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to
Ca(2+)-dependent nuclease [Arabidopsis thaliana]
GI:7684292; supporting cDNA gi|7684291|dbj|D84226.1|
Length = 323
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = +2
Query: 71 KRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSR 169
KR E R LW PE PW W +
Sbjct: 285 KRAELAKWENEARQKRVGLWASSNPEKPWEWRK 317
>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase BGQ60 precursor GB:A57512
[Hordeum vulgare]; similar to beta-mannosidase enzyme
(GI:17226270) [Lycopersicon esculentum]
Length = 512
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 318 HPNQQPKQLGYHQDCN 365
HP +PK LGY QD N
Sbjct: 356 HPTTKPKDLGYQQDWN 371
>At2g17240.1 68415.m01991 expressed protein
Length = 140
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +2
Query: 71 KRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTPE 193
+R Q P +L RR P + P W RP + P+
Sbjct: 50 RRNRNQLQVVSMAPEEEKLTRRNPLDFPIEWERPKPGRRPD 90
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 27 GSKR*NGKRER*HQGSDGQRSTVPKSRHQ-RGRGCGGEDHRSHPGTGRDHRR 179
G + +G+ + +G G R R RGRG GG+ R + G G H R
Sbjct: 39 GDRGYSGRGDGHGRGGGGDRGRGYSGRGDGRGRGGGGDRGRGYSGRGDGHGR 90
>At5g67300.1 68418.m08486 myb family transcription factor contains
PFAM profile: myb DNA binding domain PF00249
Length = 305
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 120 RGCGGEDHRSHPGTGRDHRRPK 185
R CGG DHR + G+ DHR K
Sbjct: 105 RKCGGYDHRGYDGS-EDHRPVK 125
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 27.5 bits (58), Expect = 10.0
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +2
Query: 53 RTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTS 181
++ TP KR S T TR L S WSRP +S
Sbjct: 103 KSKTPAKRPSTPTSRATSTTTRATLTSSSTTSSTRSWSRPSSS 145
>At3g24506.1 68416.m03075 expressed protein
Length = 149
Score = 27.5 bits (58), Expect = 10.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 110 PTRTRLWRRGPPESPWHWSRPPTSKTPE 193
P +L RR P + P W RP + P+
Sbjct: 71 PEEEKLTRRNPLDFPIEWERPKPGRRPD 98
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.129 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,333,867
Number of Sequences: 28952
Number of extensions: 425316
Number of successful extensions: 1355
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -