Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k18f
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    49   3e-06
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    42   3e-04
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    31   0.66 
AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    31   0.87 
Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like pr...    28   6.1  
AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like ...    28   6.1  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
 Frame = +3

Query: 249 TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYGD-ATG 425
           T   R+IGGS ++ + +P    LL     ++    CGG++++   +L+AAHC   D    
Sbjct: 53  TLDHRLIGGSESSPHSWPWTVQLLSRLGHHR----CGGSLIDPNFVLTAAHCFAKDRRPT 108

Query: 426 RWRIRVGSTFANSGGVVHNVNRIIIHPNYNRRTADS-DLCILR 551
            + +RVG   + SG   H V  + IHP YN     S D  I+R
Sbjct: 109 SYSVRVGGHRSGSGS-PHRVTAVSIHPWYNIGFPSSYDFAIMR 150


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 31/103 (30%), Positives = 53/103 (51%)
 Frame = +3

Query: 261 RIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYGDATGRWRIR 440
           RIIGG++  I+      A L ++  N     CG  +++   +++AAHC     T R  + 
Sbjct: 37  RIIGGNS--IDDGANWMAKLVSYGDNGQGILCGATVIDDFWLVTAAHCALQLQT-RSFVY 93

Query: 441 VGSTFANSGGVVHNVNRIIIHPNYNRRTADSDLCILRSNSNIA 569
           V     N+     +V    IH  YN +TAD+D+ +LR +S+++
Sbjct: 94  VREP-KNNRERSFSVKEAYIHSGYNNQTADNDIALLRISSDLS 135


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 261 RIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHC 404
           R++GG  T    +P  AAL    N       CG +IL++  +++AAHC
Sbjct: 26  RVVGGFETVPGAFPWTAALR---NKATKAHHCGASILDKTHLITAAHC 70


>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -3

Query: 533 TVSSTSVIVGMNDNSVHVMHNTPTVGKGGTNTNTPTACSVTVWTVSGTKDRSLVKDVSTT 354
           T ++T +I G    +V     T TV   GT T  PT  + T   ++GT   ++  + +TT
Sbjct: 205 TTTTTVLINGTTTTTVPTNETTTTVPLNGTTTTVPTNETTTTSPLNGTTTTTVPINGATT 264


>Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical
           protein F56H9.6 protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 3/102 (2%)
 Frame = -3

Query: 557 ITA*DAEVTVSSTSVIVGMNDNSVHVMHNTPTVGKGGTNTNTPTACSVTVWTVSGTKDRS 378
           IT    EVT ++  V       +      T T     T T TPT  + T  T + T   +
Sbjct: 45  ITTTTEEVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTPTT 104

Query: 377 LVKDVSTTRXXXXXXXPCIQQSSYTGI---LVNVGRGATNNP 261
                +TT        P    ++        V++G G  NNP
Sbjct: 105 TTSTTTTTTTTTTTATPTTTTTTMPPCNPNAVSLGMGDANNP 146


>U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like
           protease protein 6 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 288 INQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHC 404
           IN Y  +  +  TW+     + C G + + R IL+A HC
Sbjct: 58  INTYTNVKNIDETWS-----KHCSGTLTSPRHILTATHC 91


>AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like
           protease protein 7 protein.
          Length = 522

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 351 SCGGNILNQRSILSAAHCPYG-DATGRWRIRVGSTFANS 464
           +C G I++ R IL A HC  G +  G W + +  TF  S
Sbjct: 192 TCTGTIVSPRHILIATHCFAGQNRDGSWNL-IEDTFDRS 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,136,935
Number of Sequences: 27780
Number of extensions: 340723
Number of successful extensions: 868
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)