Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k18f
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65430.1 68414.m07423 zinc finger protein-related contains we...    32   0.26 
At2g40980.1 68415.m05062 expressed protein                             30   1.4  
At2g48020.2 68415.m06011 sugar transporter, putative similar to ...    28   4.3  
At2g48020.1 68415.m06010 sugar transporter, putative similar to ...    28   4.3  
At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger) fa...    28   5.7  
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ...    27   7.5  
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa...    27   10.0 
At3g10240.1 68416.m01225 F-box protein-related contains weak Pfa...    27   10.0 

>At1g65430.1 68414.m07423 zinc finger protein-related contains weak
           similarity to zinc finger proteins and a Pfam:PF01485
           IBR domain
          Length = 567

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 615 VIGTSNINRTKRCCYKLCWN 556
           V+G+ N +   RCCY  CWN
Sbjct: 229 VVGSGNYDVNCRCCYSFCWN 248


>At2g40980.1 68415.m05062 expressed protein 
          Length = 617

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 251 GRNSRHSSKPKGQQNNGRPHILSRTTDSNHYPGRWITWLA 132
           G  ++ SS   G ++  R   LSR TDS H+  +   W A
Sbjct: 14  GTTTKRSSVSSGSRSRTRRDFLSRFTDSAHFTEKLEDWFA 53


>At2g48020.2 68415.m06011 sugar transporter, putative similar to
           ERD6 protein {Arabidopsis thaliana} GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 463

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 246 PTNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCG 359
           P N + + GG  T +N + G  A+ YT+N+   W S G
Sbjct: 390 PINIKGVAGGMATLVNWF-GAWAVSYTFNFLMSWSSYG 426


>At2g48020.1 68415.m06010 sugar transporter, putative similar to
           ERD6 protein {Arabidopsis thaliana} GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 463

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 246 PTNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCG 359
           P N + + GG  T +N + G  A+ YT+N+   W S G
Sbjct: 390 PINIKGVAGGMATLVNWF-GAWAVSYTFNFLMSWSSYG 426


>At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature and Pfam:PF01485 IBR
           domain
          Length = 537

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 615 VIGTSNINRTKRCCYKLCWNYC 550
           V G+S+ + +  C YK CWN C
Sbjct: 241 VNGSSSYDVSCLCSYKFCWNCC 262


>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
           SP|P18708 Vesicular-fusion protein NSF
           (N-ethylmaleimide-sensitive fusion protein)
           (NEM-sensitive fusion protein) {Cricetulus griseus};
           contains Pfam profiles PF00004: ATPase AAA family,
           PF02359: Cell division protein 48 (CDC48) N-terminal
           domain; contains non-consensus AT-AC splice sites at
           intron 2
          Length = 742

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = -1

Query: 352 DCHH*FQFHVYNKAAIPGYWLMLVVEPPIILCGLVGTAATAASPRANKIMVDRIFLAVLL 173
           DC H    H+Y +A +    + +    P++ C L G + +  +  A  I +D  F  V +
Sbjct: 503 DCGHRHN-HIYKRAMLLVEQVKVSTRSPLVTCLLEGPSGSGKTALAATIGIDSDFPYVKI 561

Query: 172 TQIITLDG 149
               T+ G
Sbjct: 562 VSAETMIG 569


>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 373

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 585 KRCCYKLCWNYCVRCR 538
           +RCCYK   ++C+ C+
Sbjct: 267 RRCCYKCRKHFCINCK 282


>At3g10240.1 68416.m01225 F-box protein-related contains weak
           Pfam:PF00646 F-box domain
          Length = 389

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 519 VCYSWDE**FCSRYAQHPHCWQRWNQ-HEYANGL*RHRMD 403
           +C+  +E  F S   QH   ++ WN+ H Y+  + R+ M+
Sbjct: 76  LCFKANEKFFVSSIPQHRQTFETWNKSHSYSQLIDRYHME 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,213,054
Number of Sequences: 28952
Number of extensions: 311997
Number of successful extensions: 861
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)