Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k17r
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 40 0.002
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 38 0.005
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 36 0.037
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 35 0.065
AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical ... 31 1.1
U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical pr... 30 1.4
U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 29 2.4
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z92780-8|CAI46553.1| 587|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z92780-7|CAI46552.1| 624|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z92780-6|CAI46551.1| 691|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z92780-5|CAI46550.1| 532|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z81068-16|CAJ30230.1| 587|Caenorhabditis elegans Hypothetical p... 28 5.6
Z81068-15|CAB02980.2| 624|Caenorhabditis elegans Hypothetical p... 28 5.6
Z81068-14|CAJ30229.1| 691|Caenorhabditis elegans Hypothetical p... 28 5.6
Z81068-13|CAJ30228.1| 532|Caenorhabditis elegans Hypothetical p... 28 5.6
Z81068-11|CAB02981.1| 454|Caenorhabditis elegans Hypothetical p... 28 5.6
Z81068-10|CAJ30226.1| 258|Caenorhabditis elegans Hypothetical p... 28 5.6
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 28 5.6
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 28 5.6
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 28 5.6
EF443133-1|ABO31113.1| 656|Caenorhabditis elegans LIM-9 isoform... 28 5.6
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/93 (29%), Positives = 45/93 (48%)
Frame = -1
Query: 702 GSAANAGAXPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRSRDAQARQFTLAFGT 523
G++ + GA +A LV NG+ +CGA+++ + VTAAHC + Q R F
Sbjct: 41 GNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVYVREP 97
Query: 522 ANIFSGGTRVTTSSVHMHGSYNMNNLHNDVAVI 424
N + + ++H YN ND+A++
Sbjct: 98 KN--NRERSFSVKEAYIHSGYNNQTADNDIALL 128
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 38.3 bits (85), Expect = 0.005
Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 4/226 (1%)
Frame = -1
Query: 702 GSAANAGAXPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRSRDAQARQFTLAFGT 523
GS ++ + P L+ L + R CG SL+ +TAAHC+ ++D + +++ G
Sbjct: 61 GSESSPHSWPWTVQLLSRLGHHR---CGGSLIDPNFVLTAAHCF-AKDRRPTSYSVRVGG 116
Query: 522 ANIFSGGTRVTTSSVHMHGSYNMNNLHNDVAVINHNHVGFNNNIQRINLASGSNNXXXXX 343
SG T +V +H YN+ + I H N + + S
Sbjct: 117 HRSGSGSPHRVT-AVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLPAVENR 175
Query: 342 XXXXXXGRTSDAASGANNQQKRQVSLQVITNAVCAR--TFGNTLIIGSTLCVDGSNGR-S 172
++ S + R++ + +++ C+ + + + S LC S G+
Sbjct: 176 LCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAGYSYGKID 235
Query: 171 TCRXXXXXXXXXXXXXGRQLIGITSFGSAQGCQR-GFPAAFARVTS 37
+C+ +L G+ S+G GC R G P + V S
Sbjct: 236 SCQGDSGGPLMCARDGHWELTGVVSWGI--GCARPGMPGVYGNVHS 279
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 35.5 bits (78), Expect = 0.037
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Frame = -1
Query: 684 GAXPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRSRDAQARQFTLAFG--TANIF 511
GA P A L T CGAS+L T +TAAHC+ D + + + G N
Sbjct: 36 GAFPWTAALRNKATKAHH--CGASILDKTHLITAAHCF-EEDERVSSYEVVVGDWDNNQT 92
Query: 510 SGGTRV-TTSSVHMHGSYNMNNLHNDVAVINHNHVG--FNNNIQRINLAS 370
G ++ +H + Y + +D+A++ + G FN Q I L S
Sbjct: 93 DGNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICLPS 141
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 34.7 bits (76), Expect = 0.065
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -1
Query: 702 GSAANAGAXPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRSRDAQARQFTLAFGT 523
G +AN+ LA ++ +G T++CG L+ + +T+AHC S D A + G
Sbjct: 20 GFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHCVFSGDDFAVTAKVTLGD 79
Query: 522 ANI 514
++
Sbjct: 80 VHL 82
>AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical
protein Y81G3A.5 protein.
Length = 323
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 490 GDPGASGEDVSCAKSE-GELTSLGIPGPPAVSSGH 591
G PG G +V C G + S+G+PGPP G+
Sbjct: 199 GIPGVPGANVICPPGPAGSMGSVGLPGPPGNDLGN 233
>U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical
protein T13C2.3a protein.
Length = 431
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -2
Query: 374 PVEATTLLVLGPGLPASAELPMLLREPTTNK 282
PVE TT L P LP S +LPM L + TT K
Sbjct: 173 PVETTTTTTLKPTLP-SLKLPMSLDDLTTTK 202
>U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical
protein T13C2.3b protein.
Length = 506
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -2
Query: 374 PVEATTLLVLGPGLPASAELPMLLREPTTNK 282
PVE TT L P LP S +LPM L + TT K
Sbjct: 248 PVETTTTTTLKPTLP-SLKLPMSLDDLTTTK 277
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = -1
Query: 699 SAANAGAXPHLAGLVIAL-TNGRTS----ICGASLLTNTRSVTAAHCWR 568
+A N G HLA + + R ICG +L+T +TAAHC++
Sbjct: 32 AAGNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQ 80
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 490 GDPGASGEDVSCAKSEGELTSLGIPGPP 573
G+PGA G+D K +GE G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226
>Z92780-8|CAI46553.1| 587|Caenorhabditis elegans Hypothetical
protein F25H5.1b protein.
Length = 587
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 667 CWTCDRTHEWQNFNLRSFLTDQHPLCDRC 581
CW CD+T Q + +R D+ P C +C
Sbjct: 341 CWQCDQTLTGQRYIMR----DEQPYCIKC 365
>Z92780-7|CAI46552.1| 624|Caenorhabditis elegans Hypothetical
protein F25H5.1a protein.
Length = 624
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 667 CWTCDRTHEWQNFNLRSFLTDQHPLCDRC 581
CW CD+T Q + +R D+ P C +C
Sbjct: 378 CWQCDQTLTGQRYIMR----DEQPYCIKC 402
>Z92780-6|CAI46551.1| 691|Caenorhabditis elegans Hypothetical
protein F25H5.1f protein.
Length = 691
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 667 CWTCDRTHEWQNFNLRSFLTDQHPLCDRC 581
CW CD+T Q + +R D+ P C +C
Sbjct: 378 CWQCDQTLTGQRYIMR----DEQPYCIKC 402
>Z92780-5|CAI46550.1| 532|Caenorhabditis elegans Hypothetical
protein F25H5.1c protein.
Length = 532
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 667 CWTCDRTHEWQNFNLRSFLTDQHPLCDRC 581
CW CD+T Q + +R D+ P C +C
Sbjct: 286 CWQCDQTLTGQRYIMR----DEQPYCIKC 310
>Z81068-16|CAJ30230.1| 587|Caenorhabditis elegans Hypothetical
protein F25H5.1b protein.
Length = 587
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 667 CWTCDRTHEWQNFNLRSFLTDQHPLCDRC 581
CW CD+T Q + +R D+ P C +C
Sbjct: 341 CWQCDQTLTGQRYIMR----DEQPYCIKC 365
>Z81068-15|CAB02980.2| 624|Caenorhabditis elegans Hypothetical
protein F25H5.1a protein.
Length = 624
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 667 CWTCDRTHEWQNFNLRSFLTDQHPLCDRC 581
CW CD+T Q + +R D+ P C +C
Sbjct: 378 CWQCDQTLTGQRYIMR----DEQPYCIKC 402
>Z81068-14|CAJ30229.1| 691|Caenorhabditis elegans Hypothetical
protein F25H5.1f protein.
Length = 691
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 667 CWTCDRTHEWQNFNLRSFLTDQHPLCDRC 581
CW CD+T Q + +R D+ P C +C
Sbjct: 378 CWQCDQTLTGQRYIMR----DEQPYCIKC 402
>Z81068-13|CAJ30228.1| 532|Caenorhabditis elegans Hypothetical
protein F25H5.1c protein.
Length = 532
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 667 CWTCDRTHEWQNFNLRSFLTDQHPLCDRC 581
CW CD+T Q + +R D+ P C +C
Sbjct: 286 CWQCDQTLTGQRYIMR----DEQPYCIKC 310
>Z81068-11|CAB02981.1| 454|Caenorhabditis elegans Hypothetical
protein F25H5.1e protein.
Length = 454
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 667 CWTCDRTHEWQNFNLRSFLTDQHPLCDRC 581
CW CD+T Q + +R D+ P C +C
Sbjct: 208 CWQCDQTLTGQRYIMR----DEQPYCIKC 232
>Z81068-10|CAJ30226.1| 258|Caenorhabditis elegans Hypothetical
protein F25H5.1d protein.
Length = 258
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 667 CWTCDRTHEWQNFNLRSFLTDQHPLCDRC 581
CW CD+T Q + +R D+ P C +C
Sbjct: 12 CWQCDQTLTGQRYIMR----DEQPYCIKC 36
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 444 HNDVAVINHNHVGFNNNIQRINLASGSNN 358
HN++A+ N + ++ +QRINL NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 444 HNDVAVINHNHVGFNNNIQRINLASGSNN 358
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 444 HNDVAVINHNHVGFNNNIQRINLASGSNN 358
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>EF443133-1|ABO31113.1| 656|Caenorhabditis elegans LIM-9 isoform
protein.
Length = 656
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 667 CWTCDRTHEWQNFNLRSFLTDQHPLCDRC 581
CW CD+T Q + +R D+ P C +C
Sbjct: 378 CWQCDQTLTGQRYIMR----DEQPYCIKC 402
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,532,472
Number of Sequences: 27780
Number of extensions: 248926
Number of successful extensions: 916
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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