Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k17f
         (494 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.5  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   2.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.5  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 426 HMDTGGGDPGASGEDVSCAKSEGE 355
           H+ + GGD   S ++V   K EG+
Sbjct: 3   HVSSSGGDDLGSTDEVKVFKDEGD 26


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 244 SQVQQDGGEHQRWRQNHPQSWYRRSQRL 161
           S V  D G   + +  H   W+RR  RL
Sbjct: 2   SGVVGDAGRASKGQDKHMVHWFRRGLRL 29


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 353 SSPSLLAQLTSSPEAPGSPPP 415
           SSP L  +++ SP  P +P P
Sbjct: 83  SSPILAEKVSVSPTTPPTPSP 103


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 353  SSPSLLAQLTSSPEAPGSPP 412
            S PS    + ++ E PG PP
Sbjct: 980  SEPSETVTIITAEEVPGGPP 999


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.128    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,469
Number of Sequences: 336
Number of extensions: 2201
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11630247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)