BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12k16f (644 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_33523| Best HMM Match : DUF323 (HMM E-Value=7.5e-31) 30 1.9 SB_49159| Best HMM Match : WD40 (HMM E-Value=1.4) 29 2.4 SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39) 29 3.2 SB_35913| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 4.3 SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0) 28 7.5 SB_27990| Best HMM Match : DUF229 (HMM E-Value=6.5e-07) 27 9.9 SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07) 27 9.9 >SB_33523| Best HMM Match : DUF323 (HMM E-Value=7.5e-31) Length = 611 Score = 29.9 bits (64), Expect = 1.9 Identities = 17/82 (20%), Positives = 41/82 (50%) Frame = +3 Query: 348 SLAQDPAVRSVTPMLLLTLLSGRSAVKTIISSQPIGCVVTVLSGNSHALLTLTMTLNKPT 527 ++ + P + + T +L+ +L+ S V ++ QP+ V ++ GN+ ++ LN Sbjct: 282 AILKTPLLHTPTNVLVFSLVLADSLVGILL--QPLAVVYLLIEGNTCTVIDALTFLNVTV 339 Query: 528 LDASIITLLFVWDSSSTNVFYP 593 + S+ T+ V ++++P Sbjct: 340 IGVSLSTMALVSLDLYLSLYFP 361 >SB_49159| Best HMM Match : WD40 (HMM E-Value=1.4) Length = 249 Score = 29.5 bits (63), Expect = 2.4 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = -2 Query: 490 ACELPESTVTTQPIGCDEIIVLTADRP 410 +CE P S +T +GC + +V+ D P Sbjct: 100 SCEAPVSNITESSVGCHDNLVIIIDSP 126 >SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39) Length = 566 Score = 29.1 bits (62), Expect = 3.2 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 3/136 (2%) Frame = +3 Query: 117 LLFLTKMSLKTTSMPISLFNNLKCSPIKPGMISEAVAHSESTVILVSLNLYISTEEII*V 296 LL LTK L T P+SL L KP +++ + ++ ++ L T++++ + Sbjct: 43 LLSLTKKLLSLTKKPLSLTKKLLSLTKKPLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSL 102 Query: 297 --QLVIQVRFVLIVGNKFLSLAQDPAVRSVTPMLLLTLLSGRSAVKTIIS-SQPIGCVVT 467 +L+ + +L + K LSL + + S+T LL S K ++S ++ + + Sbjct: 103 TKKLLSLTKKLLSLTKKLLSLTK--KLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTK 160 Query: 468 VLSGNSHALLTLTMTL 515 L + LL+LT L Sbjct: 161 KLLSLTKKLLSLTKKL 176 Score = 29.1 bits (62), Expect = 3.2 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 3/136 (2%) Frame = +3 Query: 117 LLFLTKMSLKTTSMPISLFNNLKCSPIKPGMISEAVAHSESTVILVSLNLYISTEEII*V 296 LL LTK L T P+SL L KP +++ + ++ ++ L T++++ + Sbjct: 422 LLSLTKKLLSLTKKPLSLTKKLLSLTKKPLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSL 481 Query: 297 --QLVIQVRFVLIVGNKFLSLAQDPAVRSVTPMLLLTLLSGRSAVKTIIS-SQPIGCVVT 467 +L+ + +L + K LSL + + S+T LL S K ++S ++ + + Sbjct: 482 TKKLLSLTKKLLSLTKKLLSLTK--KLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTK 539 Query: 468 VLSGNSHALLTLTMTL 515 L + LL+LT L Sbjct: 540 KLLSLTKKLLSLTKKL 555 >SB_35913| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) Length = 1176 Score = 28.7 bits (61), Expect = 4.3 Identities = 15/66 (22%), Positives = 35/66 (53%) Frame = +3 Query: 243 VILVSLNLYISTEEII*VQLVIQVRFVLIVGNKFLSLAQDPAVRSVTPMLLLTLLSGRSA 422 +I++ + IST II + + I V ++ +K LS + + V+P++ +L ++ Sbjct: 703 IIIIITSFVISTTVIIMIAITITVVLIISYNHKPLSSSSSTFAKRVSPLVFSPVLFPCNS 762 Query: 423 VKTIIS 440 + ++S Sbjct: 763 SRLVVS 768 >SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0) Length = 609 Score = 27.9 bits (59), Expect = 7.5 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = +2 Query: 317 IRLNRGEQVLIACTGSGRTIRHPNVASNLAVGTVSCQNNNLVTANWL 457 IRL++ +L+ TGSG+T+ +A L V C L A ++ Sbjct: 266 IRLDKSNILLLGPTGSGKTLLAQTIARCLDVPFAICDCTALTQAGYV 312 >SB_27990| Best HMM Match : DUF229 (HMM E-Value=6.5e-07) Length = 887 Score = 27.5 bits (58), Expect = 9.9 Identities = 11/48 (22%), Positives = 24/48 (50%) Frame = +2 Query: 431 NNLVTANWLRGNSAFGQLTCSSHAHHDAQQTNTRCFNNHFVIRVGFIV 574 NN+V +++ + A G C H ++ + R NH+++ + +V Sbjct: 686 NNVVQKKFMKTHRAGGYGQCQRLVGHSFEKIHRRKEKNHYIVTMDLVV 733 >SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07) Length = 2435 Score = 27.5 bits (58), Expect = 9.9 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = +3 Query: 69 HCPPNFERIYQSQDNWL-LFLTKMSLKTTSMPISLFNN 179 +CP NF+ Y+ + W+ L ++L + ++L NN Sbjct: 1450 YCPMNFDEFYKQRRRWMPSTLANLALLISEWRVTLGNN 1487 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,046,838 Number of Sequences: 59808 Number of extensions: 417007 Number of successful extensions: 1139 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1064 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1137 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1633044375 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -