Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k15f
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    31   0.10 
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    27   1.7  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   5.1  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    25   5.1  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    25   9.0  

>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -2

Query: 137 ITMSRMR*ELGSKSTSRCGTADTQARARAKMKAFI 33
           I   +MR ELG   T RC   D QA    K+K FI
Sbjct: 212 ILFGKMRLELGDHVTVRCPKTDLQADIEFKVKGFI 246


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 507 DVTDNDVVCEGDGSGSXSNDVLKGKSSGSERPQDAAENAD 388
           +  DN ++     SGS + D +  +  G+E+ +D  EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 189 ERISRSQQFTDFIEQV*DHDVKDA 118
           E +SR QQF D +  +   ++KDA
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDA 86


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = -1

Query: 480 EGDGSGSXSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 367
           EG      SND L+   S +  P D     + ENAD+SFS  D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 113 ELGSKSTSRCGTADTQ 66
           EL  KST  CGT D Q
Sbjct: 53  ELNPKSTDNCGTVDFQ 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,745,765
Number of Sequences: 5004
Number of extensions: 30482
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)