Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k15f
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0204 + 1539859-1540158 30 0.97
04_04_1110 + 30973202-30973870 29 2.2
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436... 29 2.2
01_06_0034 + 25769436-25769701,25769749-25769887 29 2.2
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 28 3.9
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 27 6.8
01_06_0926 + 33075575-33076618 27 6.8
05_06_0110 + 25632514-25632834,25633200-25634039 27 9.0
03_06_0729 - 35771936-35772050,35772469-35772995 27 9.0
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 27 9.0
>12_01_0204 + 1539859-1540158
Length = 99
Score = 30.3 bits (65), Expect = 0.97
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 202 YAGSWSPPGASDIINFSGRVTDVKADD 282
+AGSW+ G + +F GRVT V+ D
Sbjct: 38 HAGSWNGEGQGGLAHFGGRVTRVRRGD 64
>04_04_1110 + 30973202-30973870
Length = 222
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 518 IAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEP 369
+ +P S T+ S+R+T A A ++A P + L L M +A+P
Sbjct: 105 VVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQP 154
>01_06_1057 -
34142979-34143114,34143212-34143390,34143496-34143669,
34143757-34144005,34144108-34144233,34144341-34144565,
34144657-34144747,34144837-34144951,34145312-34145366
Length = 449
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 86 CGTADTQARARAKMKAFIVDWIL 18
C DTQ +KM+A + DWI+
Sbjct: 210 CDYIDTQVEINSKMRAILADWII 232
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 507 DVTDNDVVCEGDGSGSXSNDVLKGKSSGSERPQDAAE 397
+V +D +C+G+G G + G ++ RPQ A E
Sbjct: 16 EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 88 RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 183
RDV+ PN + + D+ N +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = -1
Query: 507 DVTDNDVV---CEGDGSGSXSNDVLKGKSSGSER 415
++ +ND++ C G G+GS S DVL +SG E+
Sbjct: 73 ELQENDLLFFTCNGHGNGSCSFDVLIFDASGCEK 106
>01_06_0926 + 33075575-33076618
Length = 347
Score = 27.5 bits (58), Expect = 6.8
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = -1
Query: 492 DVVCEGDGSGSXSNDVLKGKSSGSERPQDAAENAD---FSFSGTD*C*NSGNSQD*VESG 322
D +C GDG G+ D L+G GS + AD G+D G D V G
Sbjct: 38 DPIC-GDGGGA---DQLRGNGGGSNAARGDGGGADPVRGGAGGSDAARGDGGGADPVRGG 93
Query: 321 ADVADTTQMQG 289
A +D + G
Sbjct: 94 AGGSDAARGDG 104
>05_06_0110 + 25632514-25632834,25633200-25634039
Length = 386
Score = 27.1 bits (57), Expect = 9.0
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = -2
Query: 377 AEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAPGGLQEPA*P 198
A PT+A G AR+K SRV + L S P ++S + G PA P
Sbjct: 164 ALPTEAPVPGKARSKRSRVAPCSWSSRLMVLPPPP-ASPPSPASAVISPSESGTAAPAFP 222
Query: 197 SRRRGSAA 174
+++ +A
Sbjct: 223 AKKAAKSA 230
>03_06_0729 - 35771936-35772050,35772469-35772995
Length = 213
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 40 AFIFALALACVSAVPHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRDGYAGSWS 219
A + +L + + A+P P+S D ++ L N+I A D LRR S+S
Sbjct: 2 AHVLSLLVVILVAIPSSRSHALPSSSSPFDAALATLQNQIAYRFHAPDLLRRAMTHASYS 61
>03_05_0642 -
26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 16 ERIQSTMKAFIFALALACVSAVPHRDVDFEPNSQR 120
+RIQ +KAF AL VPHRD P R
Sbjct: 596 QRIQEGLKAFKNDWALVWRFVVPHRDPSLLPRQWR 630
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,617,655
Number of Sequences: 37544
Number of extensions: 243267
Number of successful extensions: 771
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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