Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k15f
(519 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 38 0.007
SB_23144| Best HMM Match : Biotin_lipoyl (HMM E-Value=9.8) 34 0.061
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_14604| Best HMM Match : PT (HMM E-Value=5.1) 29 2.3
SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_45977| Best HMM Match : MBT (HMM E-Value=0) 28 5.3
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 27 9.3
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 27 9.3
SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 37.5 bits (83), Expect = 0.007
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = -1
Query: 507 DVTDNDVVCEGDGSGSXS-NDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*V 331
DV+D D V +GD G+ + +DV G S G + +++ D S +G + N N D V
Sbjct: 166 DVSDGDDVSDGDVDGANNCDDVSNGASDGDDVSNGSSDGDDVS-NGANDVSNGANDGDDV 224
Query: 330 ESGADVADTTQMQGAEVISLDVSHAAREVNDV 235
+ A+ D GA DVS+ A + +DV
Sbjct: 225 SNVANDGDDVS-NGAN-DGDDVSNGANDCDDV 254
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -1
Query: 513 SSDVTDNDVVCEGDGSG---SXSNDVLKGKSSGSERPQDAAENADFSF 379
S +D D V +G G S +DV KG SSG + A++ + S+
Sbjct: 1360 SDSSSDGDDVSDGASDGDDVSDGDDVSKGASSGDDVSNGASDGDETSY 1407
>SB_23144| Best HMM Match : Biotin_lipoyl (HMM E-Value=9.8)
Length = 929
Score = 34.3 bits (75), Expect = 0.061
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = -1
Query: 513 SSDVTDNDVVCEGDGSGSXSNDVLKGKSSG---SERPQDAAENADFSFSGTD*C*NSGNS 343
S+ +D D VC G G +DV G S G S+ D + +D + G D + N
Sbjct: 88 SNGASDGDDVCNGASDG---DDVSNGASDGVDVSDVSSDGVDVSDGASDGDDVSNGASNG 144
Query: 342 QD*VESGADVADTTQMQGAEVISLDVSHAAREVNDV 235
D V GA D ++ S DVS+ A + +DV
Sbjct: 145 DD-VSDGASDGDDVSNGASD--SDDVSNGASDGDDV 177
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 106 PNSQRILDIVISN--LFNEIGELLRAADPLRRDGY 204
P SQRIL +++ LFN+ L AA+ L R GY
Sbjct: 3158 PGSQRILVVIMGGPQLFNQKRPLSTAAEQLHRHGY 3192
>SB_14604| Best HMM Match : PT (HMM E-Value=5.1)
Length = 344
Score = 29.1 bits (62), Expect = 2.3
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = -2
Query: 425 EAKDLRTRLKMRISPSAEPTD-AETLGTARTKLSRVPT*LTRRK----CRELKSSALTSV 261
+A LRT+ K + PS P D A TLGT + R T T+ + + A T
Sbjct: 141 QATTLRTKPKPSV-PSHNPGDQATTLGTNKNPRDRAKTLGTKPQPWGPSHNPQDQAKTLG 199
Query: 260 TRPEKLMMSDAPGGLQEPA*PSR 192
T+P+ S P Q+P+ PS+
Sbjct: 200 TKPQPWGPSHNPRDQQKPSGPSQ 222
>SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 909
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 31 TMKAFIFALALACVSAVPHRDVDFEPNSQRILDIVISNLF 150
T ++ A++ AC A+ H+D D+ P+ I+ +IS +F
Sbjct: 831 TERSVFSAMSTACKQAIFHQDHDYYPSIFIIIIAIISLIF 870
>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
Length = 1198
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = -2
Query: 479 RETEAVASATTFSRASP--PEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LT 306
++T++ +S T R P P + D +++L A PT + ++ T +S T ++
Sbjct: 983 QQTKSPSSYPTVIRPKPSLPYSHDFKSKLSSPYHSEARPTSSSSVQTGEKTISSHITGVS 1042
Query: 305 RRKCRELKSSALTSVTRPEKLMMSD 231
+ + ++ ++ T P + D
Sbjct: 1043 TAQITSMSTTTESTTTHPVRRTSRD 1067
>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 27.5 bits (58), Expect = 7.0
Identities = 26/116 (22%), Positives = 49/116 (42%)
Frame = -1
Query: 468 SGSXSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESGADVADTTQMQG 289
SGS +N + KS + +P EN D + N+G+ D AD+ +
Sbjct: 19 SGSTTNVDVNSKSETASKPHIPTENYDLDDRLSL---NAGDDSDGCTKKADLTS----KN 71
Query: 288 AEVISLDVSHAAREVNDV*CTRRAPGASVAVTAERISRSQQFTDFIEQV*DHDVKD 121
+I D ++ ++ + SV + +R+S Q ++ + + D +VKD
Sbjct: 72 TTLIDKDAGSLTKDPSE----QDTNPESVFMAKDRVSAIQSLCEYEDSIEDGEVKD 123
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 27.1 bits (57), Expect = 9.3
Identities = 27/91 (29%), Positives = 40/91 (43%)
Frame = -2
Query: 512 APMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTK 333
AP++ T+ +A + + +++T S PEAK A+ T ET +A T
Sbjct: 153 APVTTTIPQAATASPSTQASSTAQEDSKPEAK----------PDEAKSTSTETAASATTT 202
Query: 332 LSRVPT*LTRRKCRELKSSALTSVTRPEKLM 240
S P T R E SAL + T E L+
Sbjct: 203 AS-TPAASTPRSYIEEAESALATGTEYEGLV 232
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 27.1 bits (57), Expect = 9.3
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +1
Query: 250 SGRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASVGSAEGEIRIFSRVLRSF 420
+GRV DD S H RV+ G L +VL G E + S L+SF
Sbjct: 38 TGRVDQFSKDDIESAHWLRVA-CGQELKIVLKSGLQFRFDGFKESDFANLSEFLKSF 93
>SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 27.1 bits (57), Expect = 9.3
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 386 SPSAEPTDAETLGTA-RTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAP 225
S +A PT++ GT TK P+ T + RE + SVT PEK + P
Sbjct: 58 SNNAPPTESNKNGTKLTTKGDSSPSAYTLKVIRESLRAGSVSVTPPEKSPQTPLP 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,863,482
Number of Sequences: 59808
Number of extensions: 265908
Number of successful extensions: 880
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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