SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k15f
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)                   38   0.007
SB_23144| Best HMM Match : Biotin_lipoyl (HMM E-Value=9.8)             34   0.061
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_14604| Best HMM Match : PT (HMM E-Value=5.1)                        29   2.3  
SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_45977| Best HMM Match : MBT (HMM E-Value=0)                         28   5.3  
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.0  
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)                     27   9.3  
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)                     27   9.3  
SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  

>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
          Length = 1544

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
 Frame = -1

Query: 507 DVTDNDVVCEGDGSGSXS-NDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*V 331
           DV+D D V +GD  G+ + +DV  G S G +    +++  D S +G +   N  N  D V
Sbjct: 166 DVSDGDDVSDGDVDGANNCDDVSNGASDGDDVSNGSSDGDDVS-NGANDVSNGANDGDDV 224

Query: 330 ESGADVADTTQMQGAEVISLDVSHAAREVNDV 235
            + A+  D     GA     DVS+ A + +DV
Sbjct: 225 SNVANDGDDVS-NGAN-DGDDVSNGANDCDDV 254



 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -1

Query: 513  SSDVTDNDVVCEGDGSG---SXSNDVLKGKSSGSERPQDAAENADFSF 379
            S   +D D V +G   G   S  +DV KG SSG +    A++  + S+
Sbjct: 1360 SDSSSDGDDVSDGASDGDDVSDGDDVSKGASSGDDVSNGASDGDETSY 1407


>SB_23144| Best HMM Match : Biotin_lipoyl (HMM E-Value=9.8)
          Length = 929

 Score = 34.3 bits (75), Expect = 0.061
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
 Frame = -1

Query: 513 SSDVTDNDVVCEGDGSGSXSNDVLKGKSSG---SERPQDAAENADFSFSGTD*C*NSGNS 343
           S+  +D D VC G   G   +DV  G S G   S+   D  + +D +  G D    + N 
Sbjct: 88  SNGASDGDDVCNGASDG---DDVSNGASDGVDVSDVSSDGVDVSDGASDGDDVSNGASNG 144

Query: 342 QD*VESGADVADTTQMQGAEVISLDVSHAAREVNDV 235
            D V  GA   D      ++  S DVS+ A + +DV
Sbjct: 145 DD-VSDGASDGDDVSNGASD--SDDVSNGASDGDDV 177


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 106  PNSQRILDIVISN--LFNEIGELLRAADPLRRDGY 204
            P SQRIL +++    LFN+   L  AA+ L R GY
Sbjct: 3158 PGSQRILVVIMGGPQLFNQKRPLSTAAEQLHRHGY 3192


>SB_14604| Best HMM Match : PT (HMM E-Value=5.1)
          Length = 344

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = -2

Query: 425 EAKDLRTRLKMRISPSAEPTD-AETLGTARTKLSRVPT*LTRRK----CRELKSSALTSV 261
           +A  LRT+ K  + PS  P D A TLGT +    R  T  T+ +        +  A T  
Sbjct: 141 QATTLRTKPKPSV-PSHNPGDQATTLGTNKNPRDRAKTLGTKPQPWGPSHNPQDQAKTLG 199

Query: 260 TRPEKLMMSDAPGGLQEPA*PSR 192
           T+P+    S  P   Q+P+ PS+
Sbjct: 200 TKPQPWGPSHNPRDQQKPSGPSQ 222


>SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 31  TMKAFIFALALACVSAVPHRDVDFEPNSQRILDIVISNLF 150
           T ++   A++ AC  A+ H+D D+ P+   I+  +IS +F
Sbjct: 831 TERSVFSAMSTACKQAIFHQDHDYYPSIFIIIIAIISLIF 870


>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
          Length = 1198

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = -2

Query: 479  RETEAVASATTFSRASP--PEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LT 306
            ++T++ +S  T  R  P  P + D +++L       A PT + ++ T    +S   T ++
Sbjct: 983  QQTKSPSSYPTVIRPKPSLPYSHDFKSKLSSPYHSEARPTSSSSVQTGEKTISSHITGVS 1042

Query: 305  RRKCRELKSSALTSVTRPEKLMMSD 231
              +   + ++  ++ T P +    D
Sbjct: 1043 TAQITSMSTTTESTTTHPVRRTSRD 1067


>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 26/116 (22%), Positives = 49/116 (42%)
 Frame = -1

Query: 468 SGSXSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESGADVADTTQMQG 289
           SGS +N  +  KS  + +P    EN D     +    N+G+  D     AD+      + 
Sbjct: 19  SGSTTNVDVNSKSETASKPHIPTENYDLDDRLSL---NAGDDSDGCTKKADLTS----KN 71

Query: 288 AEVISLDVSHAAREVNDV*CTRRAPGASVAVTAERISRSQQFTDFIEQV*DHDVKD 121
             +I  D     ++ ++    +     SV +  +R+S  Q   ++ + + D +VKD
Sbjct: 72  TTLIDKDAGSLTKDPSE----QDTNPESVFMAKDRVSAIQSLCEYEDSIEDGEVKD 123


>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 1023

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 27/91 (29%), Positives = 40/91 (43%)
 Frame = -2

Query: 512 APMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTK 333
           AP++ T+  +A  + +  +++T    S PEAK             A+ T  ET  +A T 
Sbjct: 153 APVTTTIPQAATASPSTQASSTAQEDSKPEAK----------PDEAKSTSTETAASATTT 202

Query: 332 LSRVPT*LTRRKCRELKSSALTSVTRPEKLM 240
            S  P   T R   E   SAL + T  E L+
Sbjct: 203 AS-TPAASTPRSYIEEAESALATGTEYEGLV 232


>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
          Length = 783

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = +1

Query: 250 SGRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASVGSAEGEIRIFSRVLRSF 420
           +GRV     DD  S H  RV+  G  L +VL         G  E +    S  L+SF
Sbjct: 38  TGRVDQFSKDDIESAHWLRVA-CGQELKIVLKSGLQFRFDGFKESDFANLSEFLKSF 93


>SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 386 SPSAEPTDAETLGTA-RTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAP 225
           S +A PT++   GT   TK    P+  T +  RE   +   SVT PEK   +  P
Sbjct: 58  SNNAPPTESNKNGTKLTTKGDSSPSAYTLKVIRESLRAGSVSVTPPEKSPQTPLP 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,863,482
Number of Sequences: 59808
Number of extensions: 265908
Number of successful extensions: 880
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -