BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12k15f (519 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 38 0.007 SB_23144| Best HMM Match : Biotin_lipoyl (HMM E-Value=9.8) 34 0.061 SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7 SB_14604| Best HMM Match : PT (HMM E-Value=5.1) 29 2.3 SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0 SB_45977| Best HMM Match : MBT (HMM E-Value=0) 28 5.3 SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0 SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 27 9.3 SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 27 9.3 SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3 >SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) Length = 1544 Score = 37.5 bits (83), Expect = 0.007 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Frame = -1 Query: 507 DVTDNDVVCEGDGSGSXS-NDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*V 331 DV+D D V +GD G+ + +DV G S G + +++ D S +G + N N D V Sbjct: 166 DVSDGDDVSDGDVDGANNCDDVSNGASDGDDVSNGSSDGDDVS-NGANDVSNGANDGDDV 224 Query: 330 ESGADVADTTQMQGAEVISLDVSHAAREVNDV 235 + A+ D GA DVS+ A + +DV Sbjct: 225 SNVANDGDDVS-NGAN-DGDDVSNGANDCDDV 254 Score = 27.1 bits (57), Expect = 9.3 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -1 Query: 513 SSDVTDNDVVCEGDGSG---SXSNDVLKGKSSGSERPQDAAENADFSF 379 S +D D V +G G S +DV KG SSG + A++ + S+ Sbjct: 1360 SDSSSDGDDVSDGASDGDDVSDGDDVSKGASSGDDVSNGASDGDETSY 1407 >SB_23144| Best HMM Match : Biotin_lipoyl (HMM E-Value=9.8) Length = 929 Score = 34.3 bits (75), Expect = 0.061 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 3/96 (3%) Frame = -1 Query: 513 SSDVTDNDVVCEGDGSGSXSNDVLKGKSSG---SERPQDAAENADFSFSGTD*C*NSGNS 343 S+ +D D VC G G +DV G S G S+ D + +D + G D + N Sbjct: 88 SNGASDGDDVCNGASDG---DDVSNGASDGVDVSDVSSDGVDVSDGASDGDDVSNGASNG 144 Query: 342 QD*VESGADVADTTQMQGAEVISLDVSHAAREVNDV 235 D V GA D ++ S DVS+ A + +DV Sbjct: 145 DD-VSDGASDGDDVSNGASD--SDDVSNGASDGDDV 177 >SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4475 Score = 29.5 bits (63), Expect = 1.7 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +1 Query: 106 PNSQRILDIVISN--LFNEIGELLRAADPLRRDGY 204 P SQRIL +++ LFN+ L AA+ L R GY Sbjct: 3158 PGSQRILVVIMGGPQLFNQKRPLSTAAEQLHRHGY 3192 >SB_14604| Best HMM Match : PT (HMM E-Value=5.1) Length = 344 Score = 29.1 bits (62), Expect = 2.3 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%) Frame = -2 Query: 425 EAKDLRTRLKMRISPSAEPTD-AETLGTARTKLSRVPT*LTRRK----CRELKSSALTSV 261 +A LRT+ K + PS P D A TLGT + R T T+ + + A T Sbjct: 141 QATTLRTKPKPSV-PSHNPGDQATTLGTNKNPRDRAKTLGTKPQPWGPSHNPQDQAKTLG 199 Query: 260 TRPEKLMMSDAPGGLQEPA*PSR 192 T+P+ S P Q+P+ PS+ Sbjct: 200 TKPQPWGPSHNPRDQQKPSGPSQ 222 >SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 909 Score = 28.3 bits (60), Expect = 4.0 Identities = 13/40 (32%), Positives = 24/40 (60%) Frame = +1 Query: 31 TMKAFIFALALACVSAVPHRDVDFEPNSQRILDIVISNLF 150 T ++ A++ AC A+ H+D D+ P+ I+ +IS +F Sbjct: 831 TERSVFSAMSTACKQAIFHQDHDYYPSIFIIIIAIISLIF 870 >SB_45977| Best HMM Match : MBT (HMM E-Value=0) Length = 1198 Score = 27.9 bits (59), Expect = 5.3 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Frame = -2 Query: 479 RETEAVASATTFSRASP--PEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LT 306 ++T++ +S T R P P + D +++L A PT + ++ T +S T ++ Sbjct: 983 QQTKSPSSYPTVIRPKPSLPYSHDFKSKLSSPYHSEARPTSSSSVQTGEKTISSHITGVS 1042 Query: 305 RRKCRELKSSALTSVTRPEKLMMSD 231 + + ++ ++ T P + D Sbjct: 1043 TAQITSMSTTTESTTTHPVRRTSRD 1067 >SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 942 Score = 27.5 bits (58), Expect = 7.0 Identities = 26/116 (22%), Positives = 49/116 (42%) Frame = -1 Query: 468 SGSXSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESGADVADTTQMQG 289 SGS +N + KS + +P EN D + N+G+ D AD+ + Sbjct: 19 SGSTTNVDVNSKSETASKPHIPTENYDLDDRLSL---NAGDDSDGCTKKADLTS----KN 71 Query: 288 AEVISLDVSHAAREVNDV*CTRRAPGASVAVTAERISRSQQFTDFIEQV*DHDVKD 121 +I D ++ ++ + SV + +R+S Q ++ + + D +VKD Sbjct: 72 TTLIDKDAGSLTKDPSE----QDTNPESVFMAKDRVSAIQSLCEYEDSIEDGEVKD 123 >SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) Length = 1023 Score = 27.1 bits (57), Expect = 9.3 Identities = 27/91 (29%), Positives = 40/91 (43%) Frame = -2 Query: 512 APMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTK 333 AP++ T+ +A + + +++T S PEAK A+ T ET +A T Sbjct: 153 APVTTTIPQAATASPSTQASSTAQEDSKPEAK----------PDEAKSTSTETAASATTT 202 Query: 332 LSRVPT*LTRRKCRELKSSALTSVTRPEKLM 240 S P T R E SAL + T E L+ Sbjct: 203 AS-TPAASTPRSYIEEAESALATGTEYEGLV 232 >SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) Length = 783 Score = 27.1 bits (57), Expect = 9.3 Identities = 19/57 (33%), Positives = 24/57 (42%) Frame = +1 Query: 250 SGRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASVGSAEGEIRIFSRVLRSF 420 +GRV DD S H RV+ G L +VL G E + S L+SF Sbjct: 38 TGRVDQFSKDDIESAHWLRVA-CGQELKIVLKSGLQFRFDGFKESDFANLSEFLKSF 93 >SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 528 Score = 27.1 bits (57), Expect = 9.3 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = -2 Query: 386 SPSAEPTDAETLGTA-RTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAP 225 S +A PT++ GT TK P+ T + RE + SVT PEK + P Sbjct: 58 SNNAPPTESNKNGTKLTTKGDSSPSAYTLKVIRESLRAGSVSVTPPEKSPQTPLP 112 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,863,482 Number of Sequences: 59808 Number of extensions: 265908 Number of successful extensions: 880 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 773 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 875 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1160542895 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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