BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12k13r (710 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 90 1e-18 U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 85 4e-17 U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 51 7e-07 U97408-1|AAB93344.2| 360|Caenorhabditis elegans Trypsin-like pr... 32 0.47 AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 30 1.4 >U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like protease protein 1 protein. Length = 293 Score = 90.2 bits (214), Expect = 1e-18 Identities = 71/206 (34%), Positives = 92/206 (44%), Gaps = 9/206 (4%) Frame = -3 Query: 612 CGSSILNNRSVLTAAHCIIDDAVGV-WRVRVGSTWGNSGGVVHHVNRHIIHPNYG-RWSR 439 CG S+++ VLTAAHC D + VRVG SG H V IHP Y + Sbjct: 84 CGGSLIDPNFVLTAAHCFAKDRRPTSYSVRVGGHRSGSGS-PHRVTAVSIHPWYNIGFPS 142 Query: 438 DNDIAIMRTSSNINYVNNAVQPARIPGSNYNLGDNQVVWAAGWGVTRFGGSLS-EQLRHV 262 D AIMR +N + +P +P + +N++ GWG T G SLS LR + Sbjct: 143 SYDFAIMRIHPPVN-TSTTARPICLP--SLPAVENRLCVVTGWGSTIEGSSLSAPTLREI 199 Query: 261 QVWVVNQSVCRS--RYGGNTITNNMLCAGWLDVGGRDSCTGDSGGPLY----HXXXXXXX 100 V +++ C S Y G +MLCAG+ G DSC GDSGGPL Sbjct: 200 HVPLLSTLFCSSLPNYIGRIHLPSMLCAGY-SYGKIDSCQGDSGGPLMCARDGHWELTGV 258 Query: 99 XXXXXNCGHARYPGVYARVSRYTSWI 22 C PGVY V ++WI Sbjct: 259 VSWGIGCARPGMPGVYGNVHSASTWI 284 >U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like protease protein 2 protein. Length = 265 Score = 85.4 bits (202), Expect = 4e-17 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 11/218 (5%) Frame = -3 Query: 636 NWSTWSQNCGSSILNNRSVLTAAHCI-IDDAVGVWRVRVGSTWGNS----GGVVHHVNRH 472 N +T + +CG+SIL+ ++TAAHC D+ V + V VG W N+ + ++ R Sbjct: 46 NKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVVVGD-WDNNQTDGNEQIFYLQRI 104 Query: 471 IIHPNYGRWSRDNDIAIMRTSSNINYVNNAVQPARIPGSNYNLGDNQVVWAAGWGVTRFG 292 +P Y + +DIAI+ N QP +P ++ + +GWG G Sbjct: 105 HFYPLY-KDIFSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCVVSGWG--SMG 161 Query: 291 GSLSEQLRHVQVWVVNQSVC-RSRYGGNTITNNMLCAGWLDVGGRDSCTGDSGGPLY--- 124 +E+L+ + ++N+ C S ++++ + CAG+L+ GG DSC GDSGGP Sbjct: 162 LRYAERLQAALIPIINRFDCVNSSQIYSSMSRSAFCAGYLE-GGIDSCQGDSGGPFACRR 220 Query: 123 --HXXXXXXXXXXXXNCGHARYPGVYARVSRYTSWIQS 16 C + PG+Y V+ Y SWI + Sbjct: 221 EDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLSWISA 258 >U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like protease protein 3 protein. Length = 313 Score = 51.2 bits (117), Expect = 7e-07 Identities = 60/223 (26%), Positives = 97/223 (43%), Gaps = 25/223 (11%) Frame = -3 Query: 612 CGSSILNNRSVLTAAHCIIDDAVGVWRVRVGSTWGNSGGVVHHVNRHIIHPNYGRWSRDN 433 CG++++++ ++TAAHC + + V V N+ V IH Y + DN Sbjct: 66 CGATVIDDFWLVTAAHCALQLQTRSF-VYVREP-KNNRERSFSVKEAYIHSGYNNQTADN 123 Query: 432 DIAIMRTSSNINYVNNAVQPARIPGSNYNL---GDNQVVWAAGWGVTRFGGSL------- 283 DIA++R SS+++ + ++P + + L N VV G+G+T S Sbjct: 124 DIALLRISSDLSKL--GIKPVCLVHDDSKLLKQYKNGVV--IGYGLTLGEDSSGEPKLIN 179 Query: 282 SEQLRHVQVWVVNQSVCRSRYG-----GNTITNNMLCAGWLDVGGRDSCTGDSGGP-LYH 121 S+ L+ V +++ C + IT +CAG G + GDSGGP L H Sbjct: 180 SQTLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAYLHG---TAPGDSGGPLLIH 236 Query: 120 XXXXXXXXXXXXNCG---------HARYPGVYARVSRYTSWIQ 19 + G ++PGVY R+S+Y WIQ Sbjct: 237 KSNGEYVQIGITSYGADGLDGVIDQGKFPGVYTRISKYVPWIQ 279 >U97408-1|AAB93344.2| 360|Caenorhabditis elegans Trypsin-like protease protein 6 protein. Length = 360 Score = 31.9 bits (69), Expect = 0.47 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -3 Query: 627 TWSQNCGSSILNNRSVLTAAHC 562 TWS++C ++ + R +LTA HC Sbjct: 70 TWSKHCSGTLTSPRHILTATHC 91 >AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like protease protein 5 protein. Length = 331 Score = 30.3 bits (65), Expect = 1.4 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Frame = -3 Query: 435 NDIAIMRTSSNINYVNNAVQPAR--IPGSNYNLGDNQVVWAAGWGVTRFGGSLSEQLRHV 262 NDI I+ S I+ V A +P N G N V + GWG G + + Sbjct: 176 NDIVILELESTIDDVEGANYACLPFLPEVNIQSGAN--VTSFGWGSDPGKGFDNAAFPMI 233 Query: 261 QVWVV---NQSVCRSRYGGNTITNNMLCAGWLDVGGRDSCTGDSGGPL 127 QV + + C +G +I + C + ++ C+GDSGG L Sbjct: 234 QVLTLATETLATCEENWG-TSIPFDSFCTA--EEEDKNVCSGDSGGGL 278 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,048,856 Number of Sequences: 27780 Number of extensions: 374733 Number of successful extensions: 1202 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1196 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1655655746 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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