Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k13r
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    97   1e-22
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.23 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.53 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   2.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   2.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   2.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   2.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.8  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 97.1 bits (231), Expect = 1e-22
 Identities = 71/217 (32%), Positives = 104/217 (47%), Gaps = 16/217 (7%)
 Frame = -3

Query: 612 CGSSILNNRSVLTAAHCIIDDAVGVWRVRVGS-TWGN----SGGVVHHVNRHIIHPNYGR 448
           CG++I++ R VLTAAHCIID+      + VG   W +    +  V+H +N+ IIHP Y  
Sbjct: 188 CGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDI 247

Query: 447 WSRD----NDIAIMRTSSNINYVNNAVQPARIPGSNY-NLGDNQVVWAAGWGVTRFGGSL 283
             +D    NDIA+++T  +I +  + V PA +P  ++ +      V   GWG T F G L
Sbjct: 248 IEKDDWQINDIALLKTEKDIKF-GDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSFNGML 306

Query: 282 SEQLRHVQVWVVNQSVCRSRYGGNTITNNMLCAGWLDVGGRDSCTGDSGGPLY------H 121
           S  L+   + ++ Q  C   YG   I  N +CA      G+D+C  DSGGP+        
Sbjct: 307 SHILQKTTLNMLTQVECYKYYG--NIMVNAMCA---YAKGKDACQMDSGGPVLWQNPRTK 361

Query: 120 XXXXXXXXXXXXNCGHARYPGVYARVSRYTSWIQSNS 10
                        CG  +YP    +V  Y  WI S +
Sbjct: 362 RLVNIGIISWGAECG--KYPNGNTKVGSYIDWIVSQT 396



 Score = 27.1 bits (57), Expect = 0.18
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 706 RIVGGSTTTINRYPTIAALLMT 641
           RIVGG+ T IN +P +A +  T
Sbjct: 160 RIVGGTNTGINEFPMMAGIKRT 181


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +3

Query: 402 CCLKYA*SQYHCHETICRSLGVLCVCSRDAPRRH 503
           C  KY      C E    S   +CVC R  PRRH
Sbjct: 82  CASKYCGIGKEC-ELSPNSTIAVCVCMRKCPRRH 114


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 531 VRVGSTWGNSGGVVHHVNRHIIHPNY 454
           VR  S   N GGV H  N H+ H N+
Sbjct: 261 VRRDSRRKNYGGVYHLDNHHVHHANH 286


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/49 (20%), Positives = 24/49 (48%)
 Frame = -3

Query: 495 VVHHVNRHIIHPNYGRWSRDNDIAIMRTSSNINYVNNAVQPARIPGSNY 349
           ++  ++ + IH N  +++ +N+    +   NINY+     P  +   N+
Sbjct: 81  IISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNF 129


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/49 (20%), Positives = 24/49 (48%)
 Frame = -3

Query: 495 VVHHVNRHIIHPNYGRWSRDNDIAIMRTSSNINYVNNAVQPARIPGSNY 349
           ++  ++ + IH N  +++ +N+    +   NINY+     P  +   N+
Sbjct: 81  IISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNF 129


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/49 (20%), Positives = 24/49 (48%)
 Frame = -3

Query: 495 VVHHVNRHIIHPNYGRWSRDNDIAIMRTSSNINYVNNAVQPARIPGSNY 349
           ++  ++ + IH N  +++ +N+    +   NINY+     P  +   N+
Sbjct: 81  IISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNF 129


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/49 (20%), Positives = 24/49 (48%)
 Frame = -3

Query: 495 VVHHVNRHIIHPNYGRWSRDNDIAIMRTSSNINYVNNAVQPARIPGSNY 349
           ++  ++ + IH N  +++ +N+    +   NINY+     P  +   N+
Sbjct: 81  IISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNF 129


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
 Frame = -3

Query: 405 NINYVNNAVQPARIPGSNYNLGDNQVVWAAGWGVTRFGGSLSEQLRHVQVWVV---NQSV 235
           N+++V N   P  I    + +G    V   G   + F       LR   V ++   NQSV
Sbjct: 519 NVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEEDAPLRGDLVRILKQANQSV 578

Query: 234 CRSRYGGNTITNNMLCAGWLDVGGRD 157
                GGN   N M   G    GG D
Sbjct: 579 PDWMMGGNANRNFMPGRGISKFGGED 604


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/45 (17%), Positives = 21/45 (46%)
 Frame = -3

Query: 495 VVHHVNRHIIHPNYGRWSRDNDIAIMRTSSNINYVNNAVQPARIP 361
           ++  ++ +  + NY  ++ + +    +   NINY+     P  +P
Sbjct: 81  IISSLSNNYNYSNYNNYNNNYNNYNKKLYYNINYIEQIPVPVPVP 125


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 534 RVRVGSTWGNSGGVVHHVNRHIIHPNYG 451
           R++VG     +G VV H+N    H N G
Sbjct: 439 RLQVGQYVTVNGDVVSHLNISSTHTNDG 466


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/56 (19%), Positives = 26/56 (46%)
 Frame = -3

Query: 528 RVGSTWGNSGGVVHHVNRHIIHPNYGRWSRDNDIAIMRTSSNINYVNNAVQPARIP 361
           ++ S+  N+    ++ N +  + NY  ++ + +    +   NINY+     P  +P
Sbjct: 313 KIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPVPVPVP 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,060
Number of Sequences: 438
Number of extensions: 4660
Number of successful extensions: 20
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)