Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k13r
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06910.1 68416.m00820 Ulp1 protease family protein similar to... 30 1.7
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 28 5.3
At4g03380.1 68417.m00460 expressed protein 28 7.0
At3g02690.1 68416.m00260 integral membrane family protein simila... 28 7.0
At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family p... 27 9.3
At2g36250.2 68415.m04450 chloroplast division protein FtsZ (FtsZ... 27 9.3
At2g36250.1 68415.m04449 chloroplast division protein FtsZ (FtsZ... 27 9.3
At1g76040.1 68414.m08830 calcium-dependent protein kinase, putat... 27 9.3
At1g04210.1 68414.m00411 leucine-rich repeat family protein / pr... 27 9.3
>At3g06910.1 68416.m00820 Ulp1 protease family protein similar to
sentrin/SUMO-specific protease [Homo sapiens]
GI:6906859; contains Pfam profile PF02902: Ulp1 protease
family, C-terminal catalytic domain
Length = 502
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 602 ELPQFWDQVLQFPGHKQGSYCWVPI 676
+L WDQ+L F G+ GSYC+ P+
Sbjct: 16 DLSVLWDQILNFEGY--GSYCFRPM 38
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +3
Query: 45 RERRRQGSGHDRSYFRKSSHQRPRCCDKADLQSHRCMSRDRQRPASQ 185
R + RQ H R R S +R D D HR SRDR R S+
Sbjct: 94 RSKDRQRDRHHRDRHRDRSRERSEKRDDLDDDHHR-RSRDRDRRRSR 139
>At4g03380.1 68417.m00460 expressed protein
Length = 200
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 435 NDIAIMRTSSNINYVNNAVQPARIPGSNYNLGDN 334
ND T +N + + A+QP +PG N +GD+
Sbjct: 161 NDGEAQGTMTNDVHRSEAIQPTLLPGPNQTVGDD 194
>At3g02690.1 68416.m00260 integral membrane family protein similar
to PecM protein (GI:5852331) {Vogesella indigofera} and
PecM protein (SP:P42194) [Erwinia chrysanthemi]
Length = 417
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +1
Query: 520 TDSNSPDANCV-VDDTVCCGQNGSVVENRASAIL--GPSTPVSWS 645
+ S+S +CV + V C NG ENR+S IL G T + W+
Sbjct: 82 SSSSSSSVDCVGMGSDVECVNNGEDEENRSSGILSGGEGTFLEWT 126
>At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family
protein contains Pfam profile PF03371: PRP38 family
Length = 355
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 72 HDRSYFRKSSHQRPRCCDKADLQSHRCMSRDRQR 173
HDR Y R+ H R R ++ D +R RDR+R
Sbjct: 247 HDRDYERERGHGRDRDRER-DRDHYRERDRDRER 279
>At2g36250.2 68415.m04450 chloroplast division protein FtsZ
(FtsZ2-1) identical to chloroplast division protein
AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
division protein FtsZ [Arabidopsis thaliana] GI:14195704
Length = 478
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -3
Query: 357 SNYNLGDNQVVWAAGWGVTRFGGSLSEQLRHVQVWVVNQSV 235
SNYN +V+ G G + ++ V+ W+VN +
Sbjct: 114 SNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDI 154
>At2g36250.1 68415.m04449 chloroplast division protein FtsZ
(FtsZ2-1) identical to chloroplast division protein
AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
division protein FtsZ [Arabidopsis thaliana] GI:14195704
Length = 478
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -3
Query: 357 SNYNLGDNQVVWAAGWGVTRFGGSLSEQLRHVQVWVVNQSV 235
SNYN +V+ G G + ++ V+ W+VN +
Sbjct: 114 SNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDI 154
>At1g76040.1 68414.m08830 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase GB:AAC25423 GI:3283996 [Nicotiana tabacum]
Length = 323
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 540 VWRVRVGSTWGNSGGVVHHVNRHIIHPNYGR 448
+W + VG + + G ++V ++H NYG+
Sbjct: 23 IWLIFVGKVYRDIVGSAYYVAPEVLHRNYGK 53
>At1g04210.1 68414.m00411 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1112
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 623 QVLQFPGHKQGSYCWVPIYRRC 688
Q+L +K SYCW+P + +C
Sbjct: 249 QILNLRYNKLPSYCWIPTWIQC 270
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,159,494
Number of Sequences: 28952
Number of extensions: 347969
Number of successful extensions: 1006
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -