Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k13f
(571 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 29 0.48
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom... 28 0.84
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz... 27 2.6
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.4
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 4.5
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.5
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 25 5.9
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.8
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 25 7.8
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 29.1 bits (62), Expect = 0.48
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 223 AHCIIDDAVGVWRVRVG-STWGNSGGVVHH-VNRHIIHPNYGRWSRDNDIAIM 375
A C DD + VW + G +T G ++H+ +HP + S D+D+ ++
Sbjct: 262 ASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHPCMIQPSMDSDVFVL 314
>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 28.3 bits (60), Expect = 0.84
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +1
Query: 109 TTINRYPTIAALLMTRNWSTWSQNCGSSILNNRSVLTAAHCIIDD 243
TT+ + + L +T W +W+ G+ IL++ + + +I D
Sbjct: 136 TTVYQISVVLLLCLTMGWKSWTSASGAVILSSSTRMLPVFMVIWD 180
>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 265
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 271 GSTWGNSGGVVHHVNRHIIHPNYGRWSRDNDIAIMRTS 384
GS GN GG++ N I HP SR+ + RT+
Sbjct: 175 GSDMGNDGGMIPTFNHPIFHPE--NRSRNEQASANRTN 210
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 217 TAAHCIIDDAVGVWRVRVGSTWGNSGGVVHHVNRHII 327
T+A C+ + +W++R +T+G H +N+ +I
Sbjct: 1347 TSAQCVTE-IWNLWKLRTKATFGGQHDFQHCINKRLI 1382
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 407 MLCNRPAFLDQTTTWATTRWFGRLAG---ESLGSAAHSLSNF 523
++C+RP + TTW F R+ G ESL + S SN+
Sbjct: 47 IVCSRPIVDENVTTWPENEGF-RIEGTLLESLVESVTSASNY 87
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 566 RPADALVYDPDLT*RSCSESEPPNRVTPQPAAQTTWLSPRL 444
+PA+ +V P + S EPP P P+A + ++P+L
Sbjct: 1014 QPANRVVPLPPTASQRASAYEPPTVSVPSPSALSPSVTPQL 1054
>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 253
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +1
Query: 100 GSTTTINRYPTIAALLMTRNWSTWSQNCGSSILNNRSVLTAAHCIIDDAVG 252
G TT+ N++P+ + + + + ++C + I N +V T + +ID + G
Sbjct: 114 GPTTSKNKHPSHSNTIRSPPYKVKKESCHTEINNVSNVSTESINVIDASRG 164
>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 321
Score = 25.4 bits (53), Expect = 5.9
Identities = 16/78 (20%), Positives = 38/78 (48%)
Frame = -3
Query: 263 TRQTPTASSMIQCAAVKTDRLLRIELPQFWDQVLQFLVISRAAIVGYRFIVVVLPPTILR 84
++QT + +M + A +K+DR P+ ++ L + + G + ++PP++ R
Sbjct: 147 SKQTFDSENMGEHAWLKSDR--DYYYPELLNRFFTLLRTNNPELAGEKRKYTIVPPSVHR 204
Query: 83 DGAAEMAVKAVRLNARMN 30
+G + ++ RM+
Sbjct: 205 EGKKTIFANISDISKRMH 222
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 7.8
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -3
Query: 203 LLRIELPQFWDQVLQF-LVISRAAIVGYRFIVVVLPPTIL 87
LL+I++ F +Q+ +V+ A+V + ++VLP T+L
Sbjct: 173 LLKIDIYFFLGVTVQYVMVLPEDAVVEFVLTILVLPLTVL 212
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 7.8
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +1
Query: 328 HPNYGRWSRDNDIAIMRTSSNIN--YVNNAVQPARIPGSNY-NLG 453
HPNYG W D+ R + +V + P R S Y N+G
Sbjct: 120 HPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDPKRSLESPYVNIG 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,591
Number of Sequences: 5004
Number of extensions: 47314
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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