BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12k13f (571 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 29 0.48 SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom... 28 0.84 SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz... 27 2.6 SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.4 SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.5 SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 4.5 SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.5 SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 25 5.9 SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.8 SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 25 7.8 >SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||Manual Length = 404 Score = 29.1 bits (62), Expect = 0.48 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = +1 Query: 223 AHCIIDDAVGVWRVRVG-STWGNSGGVVHH-VNRHIIHPNYGRWSRDNDIAIM 375 A C DD + VW + G +T G ++H+ +HP + S D+D+ ++ Sbjct: 262 ASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHPCMIQPSMDSDVFVL 314 >SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 220 Score = 28.3 bits (60), Expect = 0.84 Identities = 11/45 (24%), Positives = 23/45 (51%) Frame = +1 Query: 109 TTINRYPTIAALLMTRNWSTWSQNCGSSILNNRSVLTAAHCIIDD 243 TT+ + + L +T W +W+ G+ IL++ + + +I D Sbjct: 136 TTVYQISVVLLLCLTMGWKSWTSASGAVILSSSTRMLPVFMVIWD 180 >SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schizosaccharomyces pombe|chr 1|||Manual Length = 265 Score = 26.6 bits (56), Expect = 2.6 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +1 Query: 271 GSTWGNSGGVVHHVNRHIIHPNYGRWSRDNDIAIMRTS 384 GS GN GG++ N I HP SR+ + RT+ Sbjct: 175 GSDMGNDGGMIPTFNHPIFHPE--NRSRNEQASANRTN 210 >SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1502 Score = 26.2 bits (55), Expect = 3.4 Identities = 10/37 (27%), Positives = 21/37 (56%) Frame = +1 Query: 217 TAAHCIIDDAVGVWRVRVGSTWGNSGGVVHHVNRHII 327 T+A C+ + +W++R +T+G H +N+ +I Sbjct: 1347 TSAQCVTE-IWNLWKLRTKATFGGQHDFQHCINKRLI 1382 >SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 515 Score = 25.8 bits (54), Expect = 4.5 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +2 Query: 407 MLCNRPAFLDQTTTWATTRWFGRLAG---ESLGSAAHSLSNF 523 ++C+RP + TTW F R+ G ESL + S SN+ Sbjct: 47 IVCSRPIVDENVTTWPENEGF-RIEGTLLESLVESVTSASNY 87 >SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1224 Score = 25.8 bits (54), Expect = 4.5 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = -3 Query: 566 RPADALVYDPDLT*RSCSESEPPNRVTPQPAAQTTWLSPRL 444 +PA+ +V P + S EPP P P+A + ++P+L Sbjct: 1014 QPANRVVPLPPTASQRASAYEPPTVSVPSPSALSPSVTPQL 1054 >SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 253 Score = 25.8 bits (54), Expect = 4.5 Identities = 13/51 (25%), Positives = 28/51 (54%) Frame = +1 Query: 100 GSTTTINRYPTIAALLMTRNWSTWSQNCGSSILNNRSVLTAAHCIIDDAVG 252 G TT+ N++P+ + + + + ++C + I N +V T + +ID + G Sbjct: 114 GPTTSKNKHPSHSNTIRSPPYKVKKESCHTEINNVSNVSTESINVIDASRG 164 >SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation factor eIF2 beta subunit|Schizosaccharomyces pombe|chr 1|||Manual Length = 321 Score = 25.4 bits (53), Expect = 5.9 Identities = 16/78 (20%), Positives = 38/78 (48%) Frame = -3 Query: 263 TRQTPTASSMIQCAAVKTDRLLRIELPQFWDQVLQFLVISRAAIVGYRFIVVVLPPTILR 84 ++QT + +M + A +K+DR P+ ++ L + + G + ++PP++ R Sbjct: 147 SKQTFDSENMGEHAWLKSDR--DYYYPELLNRFFTLLRTNNPELAGEKRKYTIVPPSVHR 204 Query: 83 DGAAEMAVKAVRLNARMN 30 +G + ++ RM+ Sbjct: 205 EGKKTIFANISDISKRMH 222 >SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 300 Score = 25.0 bits (52), Expect = 7.8 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = -3 Query: 203 LLRIELPQFWDQVLQF-LVISRAAIVGYRFIVVVLPPTIL 87 LL+I++ F +Q+ +V+ A+V + ++VLP T+L Sbjct: 173 LLKIDIYFFLGVTVQYVMVLPEDAVVEFVLTILVLPLTVL 212 >SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizosaccharomyces pombe|chr 1|||Manual Length = 299 Score = 25.0 bits (52), Expect = 7.8 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = +1 Query: 328 HPNYGRWSRDNDIAIMRTSSNIN--YVNNAVQPARIPGSNY-NLG 453 HPNYG W D+ R + +V + P R S Y N+G Sbjct: 120 HPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDPKRSLESPYVNIG 164 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,366,591 Number of Sequences: 5004 Number of extensions: 47314 Number of successful extensions: 140 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 133 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 140 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 242064240 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -