Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k13f
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03380.1 68417.m00460 expressed protein                             28   5.0  
At1g76040.1 68414.m08830 calcium-dependent protein kinase, putat...    27   6.7  
At5g60010.1 68418.m07525 ferric reductase-like transmembrane com...    27   8.8  
At4g28490.1 68417.m04076 leucine-rich repeat transmembrane prote...    27   8.8  
At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative...    27   8.8  

>At4g03380.1 68417.m00460 expressed protein 
          Length = 200

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 358 NDIAIMRTSSNINYVNNAVQPARIPGSNYNLGDN 459
           ND     T +N  + + A+QP  +PG N  +GD+
Sbjct: 161 NDGEAQGTMTNDVHRSEAIQPTLLPGPNQTVGDD 194


>At1g76040.1 68414.m08830 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase GB:AAC25423 GI:3283996 [Nicotiana tabacum]
          Length = 323

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 253 VWRVRVGSTWGNSGGVVHHVNRHIIHPNYGR 345
           +W + VG  + +  G  ++V   ++H NYG+
Sbjct: 23  IWLIFVGKVYRDIVGSAYYVAPEVLHRNYGK 53


>At5g60010.1 68418.m07525 ferric reductase-like transmembrane
           component family protein similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], respiratory burst oxidase
           homolog from Solanum tuberosum [GI:16549089]; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 839

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 418 PARIPGSNYNLGDNQVVWAAGWGVTRFGGSLSEQLRHVKSG 540
           P   P  NY   D  ++   G G T F   L + L H+K G
Sbjct: 679 PYGAPAQNYQKFDILLLVGLGIGATPFISILKDMLNHLKPG 719


>At4g28490.1 68417.m04076 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 999

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 379 TSSNINYVNNAVQPARIPGSNYNLGDNQVVWAAG 480
           T   +    N   P++IP    NL + QV+W AG
Sbjct: 188 TLKELKLAYNLFSPSQIPSQLGNLTELQVLWLAG 221


>At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative
           (FUT2) identical to SP|O81053 Probable
           fucosyltransferase 2 (EC 2.4.1.-) (AtFUT2) {Arabidopsis
           thaliana}; similar to xyloglucan fucosyltransferase
           GI:5231145 from [Arabidopsis thaliana]
          Length = 539

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 268 VGSTWGNSGGVVHHVNRHIIHPNYGRW 348
           +G  +   G V HH+ R++ HP+   W
Sbjct: 293 LGMMFPEKGTVFHHLGRYLFHPSNQVW 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,801,018
Number of Sequences: 28952
Number of extensions: 269075
Number of successful extensions: 832
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)