Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k12f
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 28 1.1
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar... 27 1.4
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 26 4.3
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 25 5.7
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 10.0
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 10.0
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 25 10.0
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 10.0
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 10.0
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 25 10.0
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 25 10.0
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 522 ICVMTTQQEGPCMSAVGGRARPGETRRVHPSDTLVP 415
+C + + PC VG RP E + +PS VP
Sbjct: 52 LCNDSHEALSPCTQPVGNSGRPVEAFKTYPSTPAVP 87
>SPAC15E1.03 |rpl36a||60S ribosomal protein
L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 150 REDRLQLSRGPATRPPRHSEVRLQDSLMTTLARQSAPYPRRLVGLRC 290
R DR Q G T+P H + ++ ++ L S Y +LV RC
Sbjct: 42 RYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRC 88
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.8 bits (54), Expect = 4.3
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 105 GLEQMIRSTCSTFGLREDRLQLSRGPATRPPRHSEVRLQDSLMTTLARQSAPYPRRLV 278
G + +R CST+ LR+D LS R + + T+ R+ P RRLV
Sbjct: 736 GDHKQLRPGCSTYALRQDPFNLSISMFERLVEND----MEYTRLTMQRRMHPQIRRLV 789
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 5.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 427 VGGVDSARLSWSSPPSHCTH 486
+GG+D A W +HC+H
Sbjct: 194 IGGIDGAIKIWDLRNNHCSH 213
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 451 LSWSSPPSHCTHTGALLLGSHYANFIAITQCYSFR 555
L+W +P +HTG +L + N IA+ +SFR
Sbjct: 407 LTWINPYVINSHTGLILALFYLTNLIAL--AFSFR 439
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 105 GLEQMIRSTCSTFGLREDRLQLSRGPATRPP 197
G+++ +T S L + R +RGP RPP
Sbjct: 526 GVKETETTTSSESALPDARKSRARGPVRRPP 556
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 24.6 bits (51), Expect = 10.0
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -3
Query: 552 ERITLCNRNKICVMTTQQEGPCMSAVGGRARPGETRRVHPSDTLVPECTLPPCE 391
ER+ LC RN+ M M V P T ++++VP P E
Sbjct: 65 ERLQLCKRNEEEEMLNSDASEAMLTVSSVPSPTLTENESVNESVVPNILKLPDE 118
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 434 GWTRRVSPGRARPPTALIQGPSCWV 508
GW G+A P A IQ S WV
Sbjct: 58 GWDIGYDYGKASQPLAKIQAHSAWV 82
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 249 VAPASSSKSLAGVLPNDAEVLSLDLC*AEVCLRE 148
VA SS+S+AG LPN ++ LC ++ +R+
Sbjct: 368 VAVEGSSESVAGNLPNIFPIIINGLCDNDMDVRQ 401
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 423 LVPECTLPPCERGPLLRVMLQHPDVGAA 340
L+P+CT+ E+GP L LQ + A
Sbjct: 22 LIPKCTIDLYEKGPRLGGWLQSVKIPCA 49
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 508 YPTGGPLYECSGRAGSTRRD 449
Y T GPLY+ + + RRD
Sbjct: 373 YNTDGPLYQYTSKVNKIRRD 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,189
Number of Sequences: 5004
Number of extensions: 44611
Number of successful extensions: 110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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