Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k12f
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_54230| Best HMM Match : EGF (HMM E-Value=0)                         29   2.6  
SB_57667| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)              29   3.4  
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)               28   5.9  
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24)            27   7.9  
SB_7625| Best HMM Match : Pkinase (HMM E-Value=6.8e-10)                27   7.9  

>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 33/111 (29%), Positives = 43/111 (38%), Gaps = 2/111 (1%)
 Frame = -3

Query: 516  VMTTQQEGPCMSAVGGRARPGETRRVHPSDTLVPECTLPP-CERGPLLRVMLQHPDVGAA 340
            VMTT      ++ V   A PG T  V P  T+ PE T+PP     P   V  +  +    
Sbjct: 3335 VMTTVAPDSTVAPVTTFA-PGTT--VAPESTVAPETTVPPETTDAPETTVAPETTEEPET 3391

Query: 339  TLTSRVQRVGSPD-WEGNI*VPPVVLDTELTVAPASSSKSLAGVLPNDAEV 190
            T+      V      +     P      E TVAP S+  S+  VLP    V
Sbjct: 3392 TVVPETTAVPETTITQETTVAPETTALPESTVAPESTVASMTTVLPETTVV 3442



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
 Frame = -3

Query: 441  VHPSDTLVPECTLPPCERGPLLRVMLQHPDVGAATLTSRV-QRVG-SPDWEGNI*VPPVV 268
            V P  TL+PE T+       LLR     P    A  T R+   VG +PD    I +    
Sbjct: 2625 VTPEPTLLPEVTMAVETTVALLRSTYSSPSSLTAPTTRRIGGDVGYTPDPTTTIPIVTEE 2684

Query: 267  LDTELTVAPASSSKSLAGVL 208
              TE T+ P    KS    L
Sbjct: 2685 GKTEATLTPGGQLKSTVSSL 2704


>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1359

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = +3

Query: 198  RHSEVRLQDSLMTTLARQSAPYPRRLVGLRC-CPPSLVTQHAERGW 332
            +H E  + +  +    R  A     +   RC CPP    QH E+ W
Sbjct: 1052 KHCEKDIDECKVQNPCRNGATCINSMGDYRCSCPPGFTGQHCEKAW 1097


>SB_57667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 393 ERGPLLRVMLQHPDVGAATLTSRVQRVGSPDWEGNI 286
           E G ++++    P +G  TLT  + R  + DWEG++
Sbjct: 635 EEGEIIKLAKALPQMGNNTLTKDMLREYAGDWEGHL 670


>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 3094

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
 Frame = -3

Query: 441  VHPSDTLVPECTLPP---------CERGPLLRVMLQHPDVGAATLTSRVQRVGSPDWEGN 289
            V P  T+VPE T+PP           + P+ ++  + P +  A  T+  +   +P+    
Sbjct: 1958 VAPETTVVPETTMPPPKTDVSVTEATKAPVDQLKTKQPTIATAKTTADPEITVAPE---T 2014

Query: 288  I*VPPVVLDTELTVAPASSSKSLAGVLP 205
              VP      E T AP S++ + + V P
Sbjct: 2015 TVVPETTPALETTSAPESTAATESTVAP 2042


>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
          Length = 1153

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 335 SVAAPTSGCCSITRSRGPRSQG--GNVHSGTSVS 430
           SVAAPTS   S   S  PR QG  G + + T +S
Sbjct: 875 SVAAPTSAQYSAVTSSSPRGQGVAGAIQTSTPLS 908


>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2346

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 489  CMSAVGGRARPGETRRVHPSDTLVP-ECTLPP 397
            C ++  G +RP +TR  +P++ + P E  LPP
Sbjct: 1306 CTASPSGESRPEDTRNDNPANYVPPWELPLPP 1337


>SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24)
          Length = 1058

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 276 PVVLDTELTVAPASSSKSLAGVLPNDAEVLSLDLC*AEVCLREDRMCCR 130
           PV+L   L +     +KS+AG +  +  V+ +     +  L E  +CCR
Sbjct: 250 PVILSKYLPIKGEGYNKSIAGTISRNHMVMDVIFVLVDSDLVEQVVCCR 298


>SB_7625| Best HMM Match : Pkinase (HMM E-Value=6.8e-10)
          Length = 279

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 525 KICVMTTQQEGPCMSAVGGRARPGETRRVHPSDTLV 418
           + C +TT  +G  ++  GGR+R G+TR    S T V
Sbjct: 136 RYCTITTLPDGS-VAVSGGRSRRGKTRGAPNSKTFV 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,412,950
Number of Sequences: 59808
Number of extensions: 421791
Number of successful extensions: 980
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)