Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k12f
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27080-5|CAA81605.1| 1247|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z22176-14|CAA80143.1| 1247|Caenorhabditis elegans Hypothetical p...    29   2.3  
AF101078-1|AAC72406.1| 1247|Caenorhabditis elegans CLU-1 protein.      29   2.3  
Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U00032-9|AAA50631.1|  229|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z99709-7|CAB16862.2|  500|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z99709-6|CAB16863.1|  459|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U97551-2|AAP13776.1|  434|Caenorhabditis elegans Nuclear hormone...    27   9.1  
U97551-1|AAP13775.1|  435|Caenorhabditis elegans Nuclear hormone...    27   9.1  
AF083229-1|AAD03687.1|  288|Caenorhabditis elegans nuclear recep...    27   9.1  

>Z27080-5|CAA81605.1| 1247|Caenorhabditis elegans Hypothetical
           protein F55H2.6 protein.
          Length = 1247

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 462 RPGETRRVHPSDTLVPECTLPPCERGPLLRVMLQHP 355
           +P E +   PSD L P+  LP C+   L  +++  P
Sbjct: 168 QPEEKKEPKPSDILPPDHALPGCKERSLAHLLVPQP 203


>Z22176-14|CAA80143.1| 1247|Caenorhabditis elegans Hypothetical
           protein F55H2.6 protein.
          Length = 1247

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 462 RPGETRRVHPSDTLVPECTLPPCERGPLLRVMLQHP 355
           +P E +   PSD L P+  LP C+   L  +++  P
Sbjct: 168 QPEEKKEPKPSDILPPDHALPGCKERSLAHLLVPQP 203


>AF101078-1|AAC72406.1| 1247|Caenorhabditis elegans CLU-1 protein.
          Length = 1247

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 462 RPGETRRVHPSDTLVPECTLPPCERGPLLRVMLQHP 355
           +P E +   PSD L P+  LP C+   L  +++  P
Sbjct: 168 QPEEKKEPKPSDILPPDHALPGCKERSLAHLLVPQP 203


>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 256 LRIQDDWWDSDVALPVW*PNTLNAAGERGSTDV 354
           LR + +WW + VA  VW P+  ++ G+ G  DV
Sbjct: 127 LRAKPNWWQTAVAYHVWVPSFQDSDGD-GVGDV 158


>U00032-9|AAA50631.1|  229|Caenorhabditis elegans Hypothetical
           protein F37A4.3 protein.
          Length = 229

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 534 NRNKICVMTTQQEGPCMSAVGGRARPGETRRVHP 433
           N N   +M TQQ  P  S   G A  G+ + +HP
Sbjct: 148 NFNYCIIMRTQQNSPFFSNRRGNALHGDLKTLHP 181


>Z99709-7|CAB16862.2|  500|Caenorhabditis elegans Hypothetical
           protein C47B2.7b protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 387 GPLLRVMLQHPDVGAATLTSRVQRVGS 307
           GPL   +L H D G  TLT R+  +GS
Sbjct: 12  GPLNLGILGHVDSGKTTLTRRIAELGS 38


>Z99709-6|CAB16863.1|  459|Caenorhabditis elegans Hypothetical
           protein C47B2.7a protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 387 GPLLRVMLQHPDVGAATLTSRVQRVGS 307
           GPL   +L H D G  TLT R+  +GS
Sbjct: 12  GPLNLGILGHVDSGKTTLTRRIAELGS 38


>U97551-2|AAP13776.1|  434|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 14, isoform b protein.
          Length = 434

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 429 DTLVPECTLPPCERGPLLRVMLQHPDVGAATLTSRV 322
           DT+ P+   PP E  P++  + Q P   A T+ + +
Sbjct: 348 DTISPKIETPPLEMKPMMPKIAQPPVTSAPTVPTNI 383


>U97551-1|AAP13775.1|  435|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 14, isoform a protein.
          Length = 435

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 429 DTLVPECTLPPCERGPLLRVMLQHPDVGAATLTSRV 322
           DT+ P+   PP E  P++  + Q P   A T+ + +
Sbjct: 348 DTISPKIETPPLEMKPMMPKIAQPPVTSAPTVPTNI 383


>AF083229-1|AAD03687.1|  288|Caenorhabditis elegans nuclear receptor
           NHR-14 protein.
          Length = 288

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 429 DTLVPECTLPPCERGPLLRVMLQHPDVGAATLTSRV 322
           DT+ P+   PP E  P++  + Q P   A T+ + +
Sbjct: 201 DTISPKIETPPLEMKPMMPKIAQPPVTSAPTVPTNI 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,778,202
Number of Sequences: 27780
Number of extensions: 292373
Number of successful extensions: 726
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)