Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k12f
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19160.3 68417.m02827 expressed protein                             29   1.6  
At4g19160.2 68417.m02826 expressed protein                             29   1.6  
At5g15640.1 68418.m01830 mitochondrial substrate carrier family ...    28   3.7  
At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containi...    27   8.5  
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik...    27   8.5  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    27   8.5  

>At4g19160.3 68417.m02827 expressed protein
          Length = 454

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 197 RRSCRWTSAELKSVFAKTECAAGTPYHLF 111
           RR C WT  E K  F + + A+ + Y LF
Sbjct: 47  RRGCSWTGIEKKIPFPRKKTASASAYPLF 75


>At4g19160.2 68417.m02826 expressed protein
          Length = 453

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 197 RRSCRWTSAELKSVFAKTECAAGTPYHLF 111
           RR C WT  E K  F + + A+ + Y LF
Sbjct: 47  RRGCSWTGIEKKIPFPRKKTASASAYPLF 75


>At5g15640.1 68418.m01830 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 323

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -2

Query: 334 HQPRSACWVTRLGGQHLSPTSRLGYGADCRASVVIKESCRRTSE*RGGLVAG 179
           + P SA W    G         LGYG D  A+    +S     +  GG++AG
Sbjct: 194 YSPSSAAWWASYGSSQRVIWRFLGYGGDSDATAAPSKSKIVMVQAAGGIIAG 245


>At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 706

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 478 CTHTGALLLGSHYANFIAIT 537
           CTH+G L LG HY N +  T
Sbjct: 522 CTHSGQLDLGFHYFNMMQET 541


>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
           transposon protein GB:AAB95292 GI:2088658 from
           [Arabidopsis thaliana]
          Length = 1148

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 4   AGSPL-LDTHAPRQNSSTLSMRGSIKGLLRHIFQ 102
           +GS L L+TH    NS +LS   S  G+  H FQ
Sbjct: 769 SGSTLDLETHRYDTNSKSLSTMSSSSGMSSHTFQ 802


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 459 PGETRR-VHPSDTLVPECTLPPCERGP 382
           P +++R VHPS    PE TLPP +  P
Sbjct: 246 PSDSKRPVHPSPPSPPEETLPPPKPSP 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,039,841
Number of Sequences: 28952
Number of extensions: 269160
Number of successful extensions: 727
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)