Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k11f
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 76 5e-15
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 27 2.1
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 27 2.8
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch... 27 2.8
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 6.5
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 25 6.5
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 6.5
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.6
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 25 8.6
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 8.6
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 75.8 bits (178), Expect = 5e-15
Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 1/173 (0%)
Frame = +2
Query: 86 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 265
LSD VQ ++ M++FI+Q F +EK ++V++Q I
Sbjct: 3 LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLK 62
Query: 266 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 445
I SN+LN++RL++L ++ + ++ K+L + + Y++ + LIVQ
Sbjct: 63 RASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQ 122
Query: 446 ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIKK-DVVLKVDTENFLS 601
A+ L EP + RQ D +V++ + KA + K+K D L +T++FL+
Sbjct: 123 AMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLN 175
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 344 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 469
D N L+EA+KRLA +P D E+ +T + F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 593 SSQCRLSTQRPS*SYSCSLVELFRAGTPPEPCR 495
S + RLS + S++C + G P PCR
Sbjct: 85 SPKIRLSLRHVEKSWACKICTFINVGDPINPCR 117
>SPBC14C8.04 |||acetolactate synthase regulatory
unit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 4 PEPVINFLALYRPFFVLVVLKISSSHGAQRCRCSE-TDQAHD 126
P+ V NFL+L RP+ VL + +S + +E T++A D
Sbjct: 236 PDRVDNFLSLLRPYGVLEACRTGTSAMTRAPHSNEVTEEAED 277
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 6.5
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 475 DSGFHELEESLHNKCDQQL*VQF-GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHV 299
+S F +EESL K + F + + S ++ I+ I Y I THF S+++H+
Sbjct: 241 ESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVERVIECIRYSILTHFYGNALSIIEHL 300
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 356 YVRDLHALSVPSDEL 312
+V DLHAL+VP D L
Sbjct: 56 FVADLHALTVPQDPL 70
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +2
Query: 434 LIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIKKDVVLKVDTENFL 598
L+ +AL ++M+ R ++ + L+E+ L +DYK+ +KK + + +N L
Sbjct: 396 LVEEALTKVMKEKY--REKENNLELLETNLKTHHKDYKHALKKRITALEEEKNRL 448
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 85 RHGCCLFLTPLTRKTADIE 29
RHGCC+ L R DI+
Sbjct: 619 RHGCCILQRCLDRTNGDIQ 637
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 25.0 bits (52), Expect = 8.6
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3
Query: 495 PTRLWWSPCSEKL 533
P+ +WWSP S+K+
Sbjct: 228 PSTIWWSPDSDKI 240
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 302 MLNQARLKVL-KVREDHVRNVLDEARKRLAEVPKDTK 409
M +QARL+ L K+R+ + ++ +K LAE+ +D K
Sbjct: 92 MQDQARLRDLQKIRQQKAEDA-EQRKKILAEIERDKK 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,202
Number of Sequences: 5004
Number of extensions: 37057
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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