BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12k11f (605 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 76 5e-15 SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 27 2.1 SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 27 2.8 SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch... 27 2.8 SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 6.5 SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 25 6.5 SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 6.5 SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.6 SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 25 8.6 SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 8.6 >SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces pombe|chr 1|||Manual Length = 227 Score = 75.8 bits (178), Expect = 5e-15 Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 1/173 (0%) Frame = +2 Query: 86 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 265 LSD VQ ++ M++FI+Q F +EK ++V++Q I Sbjct: 3 LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLK 62 Query: 266 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 445 I SN+LN++RL++L ++ + ++ K+L + + Y++ + LIVQ Sbjct: 63 RASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQ 122 Query: 446 ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIKK-DVVLKVDTENFLS 601 A+ L EP + RQ D +V++ + KA + K+K D L +T++FL+ Sbjct: 123 AMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLN 175 >SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosaccharomyces pombe|chr 2|||Manual Length = 302 Score = 27.1 bits (57), Expect = 2.1 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = +2 Query: 344 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 469 D N L+EA+KRLA +P D E+ +T + F+++ P Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217 >SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharomyces pombe|chr 2|||Manual Length = 467 Score = 26.6 bits (56), Expect = 2.8 Identities = 11/33 (33%), Positives = 16/33 (48%) Frame = -1 Query: 593 SSQCRLSTQRPS*SYSCSLVELFRAGTPPEPCR 495 S + RLS + S++C + G P PCR Sbjct: 85 SPKIRLSLRHVEKSWACKICTFINVGDPINPCR 117 >SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosaccharomyces pombe|chr 2|||Manual Length = 289 Score = 26.6 bits (56), Expect = 2.8 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Frame = +1 Query: 4 PEPVINFLALYRPFFVLVVLKISSSHGAQRCRCSE-TDQAHD 126 P+ V NFL+L RP+ VL + +S + +E T++A D Sbjct: 236 PDRVDNFLSLLRPYGVLEACRTGTSAMTRAPHSNEVTEEAED 277 >SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 690 Score = 25.4 bits (53), Expect = 6.5 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -2 Query: 475 DSGFHELEESLHNKCDQQL*VQF-GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHV 299 +S F +EESL K + F + + S ++ I+ I Y I THF S+++H+ Sbjct: 241 ESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVERVIECIRYSILTHFYGNALSIIEHL 300 >SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 361 Score = 25.4 bits (53), Expect = 6.5 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = -1 Query: 356 YVRDLHALSVPSDEL 312 +V DLHAL+VP D L Sbjct: 56 FVADLHALTVPQDPL 70 >SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces pombe|chr 1|||Manual Length = 464 Score = 25.4 bits (53), Expect = 6.5 Identities = 15/55 (27%), Positives = 31/55 (56%) Frame = +2 Query: 434 LIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIKKDVVLKVDTENFL 598 L+ +AL ++M+ R ++ + L+E+ L +DYK+ +KK + + +N L Sbjct: 396 LVEEALTKVMKEKY--REKENNLELLETNLKTHHKDYKHALKKRITALEEEKNRL 448 >SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 780 Score = 25.0 bits (52), Expect = 8.6 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = -2 Query: 85 RHGCCLFLTPLTRKTADIE 29 RHGCC+ L R DI+ Sbjct: 619 RHGCCILQRCLDRTNGDIQ 637 >SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces pombe|chr 1|||Manual Length = 793 Score = 25.0 bits (52), Expect = 8.6 Identities = 7/13 (53%), Positives = 11/13 (84%) Frame = +3 Query: 495 PTRLWWSPCSEKL 533 P+ +WWSP S+K+ Sbjct: 228 PSTIWWSPDSDKI 240 >SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 240 Score = 25.0 bits (52), Expect = 8.6 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = +2 Query: 302 MLNQARLKVL-KVREDHVRNVLDEARKRLAEVPKDTK 409 M +QARL+ L K+R+ + ++ +K LAE+ +D K Sbjct: 92 MQDQARLRDLQKIRQQKAEDA-EQRKKILAEIERDKK 127 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,107,202 Number of Sequences: 5004 Number of extensions: 37057 Number of successful extensions: 122 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 122 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 266270664 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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