Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k11f
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 96 2e-20
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 89 3e-18
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 82 4e-16
09_02_0115 + 4413714-4414475 32 0.41
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 29 2.9
12_02_0312 + 17395716-17398112 29 3.8
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 5.0
03_05_0331 - 23233883-23233972,23234099-23234164,23234300-232343... 27 8.7
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 95.9 bits (228), Expect = 2e-20
Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 1/174 (0%)
Frame = +2
Query: 86 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 265
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 266 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 445
I+ S LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ
Sbjct: 61 QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120
Query: 446 ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIK-KDVVLKVDTENFLSP 604
L +L EP V +R R+ D VES+L A+ +Y +K + + VD + +L P
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVESVLHSAKNEYASKAEVHHPEILVDHDVYLPP 174
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 89.0 bits (211), Expect = 3e-18
Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 12/185 (6%)
Frame = +2
Query: 86 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 265
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60
Query: 266 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV- 442
I+ S LN AR+KVL+ ++ V + ++A K L V KD Y ++L LIV
Sbjct: 61 QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120
Query: 443 ----------QALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIKKDV-VLKVDTE 589
Q+L +L EP+V +R R+ D+ VES+L A+++Y K K ++ + +D +
Sbjct: 121 RKDSEIIDQIQSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNLPKILIDGK 180
Query: 590 NFLSP 604
+L P
Sbjct: 181 VYLPP 185
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 81.8 bits (193), Expect = 4e-16
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 11/184 (5%)
Frame = +2
Query: 86 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 265
++D DV +Q+K M FI Q F IEK +LV+ ++ +I
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61
Query: 266 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 445
I+ S LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IVQ
Sbjct: 62 QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121
Query: 446 ----------ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIK-KDVVLKVDTEN 592
+L +L EP V +R R+ D+ LVES+L A+ +Y +K + VD
Sbjct: 122 DKLTKKNPEQSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNV 181
Query: 593 FLSP 604
+L P
Sbjct: 182 YLPP 185
>09_02_0115 + 4413714-4414475
Length = 253
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 415 LRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 513
LR H+ + SLP H HHPRP +GS G
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 314 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 448
+RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
>12_02_0312 + 17395716-17398112
Length = 798
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 287 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 430
++ +N+ N L VLK+ D + + L L+ PKD +++ ELL+
Sbjct: 383 VKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 433 TYCAGSLPAHGTHCHHPRPSNRQGSGG 513
TYCAG + G H HH ++Q GG
Sbjct: 34 TYCAGGVDDVGHHHHHHVHQHQQQHGG 60
>03_05_0331 -
23233883-23233972,23234099-23234164,23234300-23234365,
23234451-23234675,23234794-23235279
Length = 310
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 532 SFSEQGLHQSLVGLTDADGDSGFHELEESLHNKCD 428
S EQG Q + + + +GD GF +L +S N D
Sbjct: 107 SIQEQGAAQFMDAILNRNGDPGFDDLADSSVNLLD 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,718,801
Number of Sequences: 37544
Number of extensions: 292372
Number of successful extensions: 859
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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