Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k11f
(605 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATP... 105 2e-23
At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putati... 98 5e-21
At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putati... 88 4e-18
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 29 1.8
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 29 3.2
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 29 3.2
At3g58810.2 68416.m06555 zinc transporter, putative similar to z... 28 4.2
At3g58810.1 68416.m06554 zinc transporter, putative similar to z... 28 4.2
At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ... 28 5.5
At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II f... 27 9.6
>At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATPase
E subunit / vacuolar proton pump E subunit (VATE)
identical to SP|Q39258 Vacuolar ATP synthase subunit E
(EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump
E subunit) {Arabidopsis thaliana}
Length = 230
Score = 105 bits (253), Expect = 2e-23
Identities = 63/174 (36%), Positives = 92/174 (52%), Gaps = 1/174 (0%)
Frame = +2
Query: 86 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 265
++D DV +QI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60
Query: 266 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 445
I S LN +R+KVL+ ++D V + D+A K L V +D Y +LL LIVQ
Sbjct: 61 QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120
Query: 446 ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIKKDV-VLKVDTENFLSP 604
L +L EP+V +R R+ D LVE++L A+++Y K K + VDT+ FL P
Sbjct: 121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPP 174
>At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 235
Score = 97.9 bits (233), Expect = 5e-21
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 1/174 (0%)
Frame = +2
Query: 86 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 265
++DADV KQI+ M+ FI Q FNIE+ +L++ + K+
Sbjct: 1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60
Query: 266 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 445
I S LN +R+K L+ ++D V + D A K L V D Y +LL +LI++
Sbjct: 61 QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120
Query: 446 ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIK-KDVVLKVDTENFLSP 604
+L +L EP+V +R R+ DK +VES++ A++ Y K K + +D + FL P
Sbjct: 121 SLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPP 174
>At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 237
Score = 88.2 bits (209), Expect = 4e-18
Identities = 61/180 (33%), Positives = 88/180 (48%), Gaps = 7/180 (3%)
Frame = +2
Query: 86 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 265
++DAD QI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60
Query: 266 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKL------YSELL 427
I S LN +R+KVL+ ++D V + +EA K+L +V + Y LL
Sbjct: 61 QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120
Query: 428 VTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIKKDV-VLKVDTENFLSP 604
LIVQ L +L EP V +R R+ D +VES+L A ++Y K K + VD + FL P
Sbjct: 121 KDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPP 180
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 397 KGHQTVLRAAGHTYC-AGSLPAHGTHCHHPRPSNRQGSGGVPAR 525
+GH+ V + +C G+ G+ C +P G+G PAR
Sbjct: 1613 RGHRVVYSRSSRFFCDCGAGGVRGSSCQCLKPRKYNGNGSAPAR 1656
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 28 ALYRPFFVLVVLKISSSHGAQRCRCSETDQAHDG 129
+LY P + +VLK S + A +CR E ++ +G
Sbjct: 508 SLYHPAYAPIVLKKSQTLQADKCREEENEELDEG 541
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 28 ALYRPFFVLVVLKISSSHGAQRCRCSETDQAHDG 129
+LY P + +VLK S + A +CR E ++ +G
Sbjct: 505 SLYHPAYAPIVLKKSQTLQADKCREEENEELDEG 538
>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 393
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 401 PLALQPGACELHQVHYVRDLHALSVPSDELGSAC 300
P L+ G CE+ +V V +LH ++ +L AC
Sbjct: 323 PTMLEKGVCEIEEVVAVHELHIWAITVGKLLLAC 356
>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 432
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 401 PLALQPGACELHQVHYVRDLHALSVPSDELGSAC 300
P L+ G CE+ +V V +LH ++ +L AC
Sbjct: 362 PTMLEKGVCEIEEVVAVHELHIWAITVGKLLLAC 395
>At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 874
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 320 LKVLKVREDHVRNVLDEARKRLAEV 394
LK +KV+ED N+LDE ++ L+EV
Sbjct: 54 LKRIKVQEDRGLNLLDEVQQWLSEV 78
>At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II
family protein low similarity to KbaY
(tagatose-1,6-bisphosphate aldolase) [Escherichia coli]
GI:8895753; contains Pfam profile PF01116:
Fructose-bisphosphate aldolase class-II
Length = 1373
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 404 CPLALQPGACELHQVHYVRDLHALSVPSDE 315
CP LQ G + VHYV D L VP+ E
Sbjct: 764 CPFFLQGGRYTIDDVHYVADSDRL-VPAGE 792
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,386,929
Number of Sequences: 28952
Number of extensions: 210726
Number of successful extensions: 597
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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