Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k10f
(368 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 0.70
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 26 2.1
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 2.1
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 2.8
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 2.8
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 4.9
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 25 4.9
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 25 4.9
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 24 6.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 24 6.5
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 27.5 bits (58), Expect = 0.70
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 99 RSLAVQLQTAASTATAKVRTETIVPIESN 13
R L + + A +A+ K+ TE I+P ESN
Sbjct: 605 RQLHIDFENPAVSASEKLSTEEIIPQESN 633
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 1 DQISIRLDRNNGFRSHLSRSCAR 69
D +S R DR++ FRSH S R
Sbjct: 41 DDVSSRRDRHDSFRSHESNKIRR 63
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 2.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 214 LPFNCYLFPWRILRSCIPSHYRWIFP 291
LP + + F W +C P H WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.4 bits (53), Expect = 2.8
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 180 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVAXSPVKYLMFTLLLTIPNS 350
N L+ F T T LLP++ I ++TV LSL + S V+ L+F +L +
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349
Query: 351 LRRIT 365
+ +T
Sbjct: 350 VNELT 354
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 2.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 325 VNIRYFTGLXATGRSSDNATVCRIVEFSME 236
+N+ Y + L ATG S + TV I E + E
Sbjct: 94 INVEYQSNLSATGESVNTTTVSAINEDTRE 123
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 24.6 bits (51), Expect = 4.9
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 117 LASIPAWSKLKYSYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVALS 278
L S+ ++ + ++SY S NG + + P L+P S + S + VA+S
Sbjct: 120 LNSVKSFVEKQFSYSSGTNGILATFLTAIPPNIFILLVPKSFDTSMLNLFVAVS 173
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 328 KVNIRYFTGLXATGRSSDNATVCRIVEFSMETGSS*KVVVVGENNTS 188
K+ FTG ATG+ +A IV ++E G +++ + + S
Sbjct: 241 KIAYLAFTGSLATGKKIMHAAAENIVPLTLELGGKSPLIICEDADLS 287
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 24.6 bits (51), Expect = 4.9
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 184 VRWYCSHQL 210
+RWYC HQL
Sbjct: 237 IRWYCRHQL 245
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 24.2 bits (50), Expect = 6.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 95 DLGRPVSIGEHPSLVQIEVFLPILNQWFQQC 187
D PVS G HP L+ EV +PI + Q C
Sbjct: 468 DRALPVS-GSHPFLLLNEVQVPIRSLIIQPC 497
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 130 GMLANRHRSTEIASSAAADGSEHSY 56
G+ + RSTEIA + + DG+ + Y
Sbjct: 1632 GVYSPYRRSTEIAENMSMDGNAYPY 1656
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,526,157
Number of Sequences: 5004
Number of extensions: 29693
Number of successful extensions: 77
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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