Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k10f
(368 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 30 0.65
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 30 0.65
02_02_0258 - 8374442-8375083 27 4.6
06_03_0819 - 24977204-24977290,24977372-24977746,24977823-249781... 27 6.1
06_03_0089 - 16475677-16476309 27 6.1
04_04_0208 - 23605701-23607149 27 6.1
02_04_0240 - 21194597-21194743,21195579-21195680,21195797-211958... 27 6.1
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 27 6.1
01_06_0995 + 33661367-33661380,33661729-33661826,33662059-336622... 27 6.1
01_06_0994 + 33653055-33653144,33653219-33653310,33653483-336535... 27 6.1
09_04_0649 + 19212097-19212176,19212448-19212579,19212789-192131... 26 8.1
05_07_0100 + 27679280-27680320 26 8.1
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 26 8.1
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 29.9 bits (64), Expect = 0.65
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
+KG W +YQR GTID W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 29.9 bits (64), Expect = 0.65
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
+KG W +YQR GTID W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715
>02_02_0258 - 8374442-8375083
Length = 213
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Frame = +1
Query: 232 LFPWRILRSC---IPSHYRWI--FPSQXAR 306
LFPW LR C +PS RW+ P + AR
Sbjct: 66 LFPWSALRRCLAPLPSAARWLLCLPCRCAR 95
>06_03_0819 -
24977204-24977290,24977372-24977746,24977823-24978199,
24978456-24978770,24978861-24979296,24979386-24979463
Length = 555
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 187 RWYCSHQLPLPFNC-YLFPWRILR 255
+W H+ P P NC + +P R++R
Sbjct: 263 KWCSYHEFPTPHNCEFHYPERVMR 286
>06_03_0089 - 16475677-16476309
Length = 210
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 148 SIPTHLESMVPTVRWYCSHQLPLPFNCYLFPWRILRSCIPSH 273
S P VP V +YC+ +LP P L R+ R C H
Sbjct: 115 SRPAAQRCQVPAVPYYCATELPCP---PLLRRRLRRCCTGEH 153
>04_04_0208 - 23605701-23607149
Length = 482
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 174 GSNSALVLFSPTTTTFQLLP 233
G SA VLF+P TTT +LP
Sbjct: 96 GGQSAFVLFNPITTTEIVLP 115
>02_04_0240 -
21194597-21194743,21195579-21195680,21195797-21195875,
21195921-21196043,21196135-21196193,21196453-21196974,
21197434-21198177,21198426-21198506
Length = 618
Score = 26.6 bits (56), Expect = 6.1
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 123 SIPAWSKLKYSYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVALSLDLPVAXS 302
S+P + K S+ S + SNS F + ++P S + ++ LHT +SL S
Sbjct: 400 SLPRAAVNKGSHVSHVALSNSTTQKFVTSHPKHSVMPNSSQRASTLHTTQVSLKRSAGVS 459
Query: 303 PV 308
V
Sbjct: 460 SV 461
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 26.6 bits (56), Expect = 6.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 179 GTIDSRWVGILQFGPGW 129
G + +RW G+ Q G GW
Sbjct: 222 GPVPARWKGVCQVGEGW 238
>01_06_0995 +
33661367-33661380,33661729-33661826,33662059-33662214,
33663307-33663926,33664020-33664090,33664176-33664427,
33664494-33664611,33664715-33664886,33664970-33665511
Length = 680
Score = 26.6 bits (56), Expect = 6.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 179 GTIDSRWVGILQFGPGW 129
G + +RW G+ Q G GW
Sbjct: 104 GPVPARWKGVCQVGEGW 120
>01_06_0994 +
33653055-33653144,33653219-33653310,33653483-33653580,
33653758-33653913,33654009-33654628,33654721-33654794,
33654905-33655156,33655250-33655367,33655468-33655639,
33655729-33656270
Length = 737
Score = 26.6 bits (56), Expect = 6.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 179 GTIDSRWVGILQFGPGW 129
G + +RW G+ Q G GW
Sbjct: 160 GPVPARWKGVCQVGEGW 176
>09_04_0649 +
19212097-19212176,19212448-19212579,19212789-19213196,
19213853-19213943,19214198-19214251
Length = 254
Score = 26.2 bits (55), Expect = 8.1
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 166 QDG*EYFNLDQAGMLANRHRSTEIASSAAADGSEHSYG*GENGNH-CSY 23
+DG Y+N+++ G LA R + G E YG G + CS+
Sbjct: 59 RDGKLYYNVEEIGFLAERGALVLLDYEGETIGMEEIYGKIAGGKYGCSW 107
>05_07_0100 + 27679280-27680320
Length = 346
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 94 ASSAAADGSEHSYG*GENGNHCSYR 20
A++AA SE S G G+N NH + R
Sbjct: 205 AAAAAVSDSEDSEGPGDNNNHNAQR 229
>01_06_1801 -
39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 116 IGEHPSLVQIEV---FLPILNQWFQQCAGIVLTNYHYLSTA 229
I +H S + I ++ ++++ F +C GI+L +LSTA
Sbjct: 790 IAQHRSKIIINADATYIKMVSEQFDRCHGILLQYVEFLSTA 830
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,196,989
Number of Sequences: 37544
Number of extensions: 210853
Number of successful extensions: 518
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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