Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k10f
(368 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23) 33 0.096
SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028) 31 0.29
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 2.7
SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28) 27 4.8
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 27 4.8
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0) 26 8.3
SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
>SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)
Length = 275
Score = 32.7 bits (71), Expect = 0.096
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2
Query: 340 MVNSK-VNIRYFTGLXATGRSSDNATVCRIVEFSMETGSS*KVVVVGENNTSALLE 176
M+NS+ +N FTG TGR AT +V+ +E GS ++V+ + + +E
Sbjct: 215 MINSRGINALTFTGSLETGRKVAAATAVNLVKCQLEMGSKNALIVLDDADLDNAVE 270
>SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028)
Length = 333
Score = 31.1 bits (67), Expect = 0.29
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +2
Query: 146 EVFLPILNQW--FQQCAGIVLTNYHYLSTATCFH-GEFYDPAYRRIIAGSSRRXEPGEIS 316
E F+ + W QC+G ++ H ++ A C H G+++ I+ G S E+
Sbjct: 138 EPFVSSVKLWSDVMQCSGTLIGPCHVITAAHCIHNGKWFVSPLTAILVGVSNTSSTDELD 197
Query: 317 YVHFAV 334
Y FAV
Sbjct: 198 Y--FAV 201
>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 27.9 bits (59), Expect = 2.7
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 163 LESMVPTVRWYCS-HQLPLPFNCYLFPWRILRSCIPSHYRWIFPSQXAR*NILCSLCC*P 339
L +P W + + +P P +C L WRIL S P HY+ I + + SLC P
Sbjct: 38 LRGSLPKKCWTVTQNDVPTPLDCGLSAWRIL-SGFP-HYKLIEDDHIEIKDGIISLCLSP 95
>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 473
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 131 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 253
+LV +E + P N+W ++ +LT Y STA G+ Y
Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150
>SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 201 SPTTTTFQLLPVSMENSTILHTVALSLDLPVAXSPVKYLMFTLLLTIPNSL 353
SP+T+ Q++P + + L T + S +LPV + FT IP +
Sbjct: 143 SPSTSVKQMVPNTQASRLCLQTTSASSNLPVTTQQSFRMTFTPPSMIPKPI 193
>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
Length = 1643
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 87 VQLQTAASTATAKVRTETIVPIESNGDL 4
V ++T TA K E P+ESN DL
Sbjct: 342 VSMETEDGTANPKADVEMDAPVESNNDL 369
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 126 IPAWSKLKYSYPS*INGSNSALVLFSPTTTT 218
IP+WS L S+PS + +SA SP TT
Sbjct: 862 IPSWSSLSSSFPSLSSRLSSASSSASPPGTT 892
>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -3
Query: 165 KMGRNTSIWTRLGC-SPIDTGLPRSLAVQLQTAASTATAKVRTETIVPIESNG 10
K+G+ TS + + + G+P S ++++TA ++ K+R P+E NG
Sbjct: 579 KLGKFTSYRVSVSAFTSVGDGVP-SAEMKIKTAEDISSRKIRVRWDTPMEPNG 630
>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 1 DQISIRLDRNNGFRSHLSRSCARCRLQLH 87
D S+ L NGF + L R CAR +L+
Sbjct: 441 DGASVMLGARNGFAAKLKRPCARMSRRLN 469
>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 968
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +2
Query: 185 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRXEPGEISYVHFA---VNHPEFS 352
C G +++ ++ A C G + P+Y +++ G R P H + HP ++
Sbjct: 93 CGGSLVSPTWVVTAAHCIAGSSHTPSY-KVVTGEHIRNSPEGTEQTHDVKRIITHPTYN 150
>SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 26.2 bits (55), Expect = 8.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 190 WYCSHQLPLPFNCYLFPWRILRSCIPSHYR 279
W C + PFNCY F ++ + S+ R
Sbjct: 747 WECDYLFEKPFNCYRFLFQATAFFLASNTR 776
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,541,923
Number of Sequences: 59808
Number of extensions: 229397
Number of successful extensions: 522
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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