Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k10f
         (368 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   0.87 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   2.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.1  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   6.1  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   6.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   6.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   8.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   8.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   8.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 110  VSIGEHPSLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRR 271
            +S+G +P   + + FL  L+ W    A  V+      S   C++G    PAYRR
Sbjct: 919  LSLGSNPWSCRCK-FLQELSSWVSDNAHKVVD----ASDVWCYYGGDARPAYRR 967


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 224 LKGSGSW*EQYQRTVGTIDSR 162
           +K SG W  +Y R +   D R
Sbjct: 288 VKNSGQWLREYDRELEDFDGR 308


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 262 IPSHYRWIF 288
           IP+HY W++
Sbjct: 107 IPNHYLWLY 115


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 262 IPSHYRWIF 288
           IP+HY W++
Sbjct: 138 IPNHYLWLY 146


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 319 IRYFTGLXATGRSSDNATVC 260
           +RYF G  A+G ++   ++C
Sbjct: 112 LRYFVGNLASGGAAGATSLC 131


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 319 IRYFTGLXATGRSSDNATVC 260
           +RYF G  A+G ++   ++C
Sbjct: 112 LRYFVGNLASGGAAGATSLC 131


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 160 HLESMVPTVRWYCSHQLPLPF 222
           H    +PT+ W+ + Q P  F
Sbjct: 326 HALITLPTIFWFLTRQNPAAF 346


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 326 FAVNHPEFSEE 358
           +A+NHP + +E
Sbjct: 336 YAINHPRYRQE 346


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 332 VNHPEFSEENY 364
           +N  EF++ENY
Sbjct: 55  INESEFNDENY 65


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 326 FAVNHPEFSEE 358
           +A+NHP + +E
Sbjct: 336 YAINHPRYRQE 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,237
Number of Sequences: 438
Number of extensions: 2324
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)