Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k10f
(368 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative... 30 0.42
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative... 30 0.42
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative... 30 0.42
At4g11530.1 68417.m01850 protein kinase family protein contains ... 28 2.2
At4g33600.1 68417.m04773 expressed protein 27 2.9
At5g43390.1 68418.m05304 hypothetical protein strong similarity ... 27 5.2
At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protei... 26 9.0
At4g22970.1 68417.m03315 peptidase C50 family protein contains P... 26 9.0
At2g33420.1 68415.m04096 expressed protein 26 9.0
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 26 9.0
At1g02440.1 68414.m00192 ADP-ribosylation factor, putative simil... 26 9.0
>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 0.42
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 0.42
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 0.42
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 161 ILNQWFQQCAGIVLTNYHYLSTATCFHGEF-----YDPAYRRIIA 280
+LN F L + Y+ST TCF+G F YD RRI++
Sbjct: 2 MLNTLFLPIFLFFLITFDYVSTQTCFNGYFKPNGTYDLNRRRILS 46
>At4g33600.1 68417.m04773 expressed protein
Length = 453
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 163 LESMVPTVRWYCSHQLPLPFNCYLFPWRILR 255
L +MVP V W HQ P L+ W LR
Sbjct: 183 LSAMVPFVAWSLRHQCENPQRWVLYHWGELR 213
>At5g43390.1 68418.m05304 hypothetical protein strong similarity to
unknown protein (emb|CAB86628.1)
Length = 643
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 177 SNSALVLFSPTTTTFQLLPVSMENSTILHTVALSLDLP 290
S+S +L P + PVS +NS I L+L+ P
Sbjct: 3 SSSTAILLGPPSVAAMETPVSDDNSVISQIATLNLEEP 40
>At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protein
contains Pfam profiles: PF02538 hydantoinase
B/oxoprolinase, PF01968 hydantoinase/oxoprolinase,
PF05378 hydantoinase/oxoprolinase N-terminal region
Length = 1266
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 151 IPTHLESMVPTVRWYCSH 204
+P HL +M TVRW H
Sbjct: 791 VPVHLGAMSSTVRWQLKH 808
>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
PF03568: Peptidase family C50
Length = 1773
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 172 MVPTVRWYCSHQLPLPFNCYLFPWRILRSCIPSHYRWIF 288
++ T W C + L CYL PW +L+ + S + +F
Sbjct: 858 LLATDFWPCGNFLWDINRCYLSPWSVLQCYLESTLQVLF 896
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 122 EHPSLVQIEVFLPILNQWFQQCAGIVLTNYH 214
E +L + E F PIL +W AG+ + H
Sbjct: 531 EELALRERECFSPILKRWHSVAAGVASVSLH 561
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 218 LSTATCFHGEFYDPAYRRIIAGSSRRXEPGEISYVH 325
L+ C F+ A +R + G+ R E GE+ ++H
Sbjct: 633 LAFRRCLAASFFLKAAQRQLDGTYRALESGEVVHIH 668
>At1g02440.1 68414.m00192 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor GB:AAA32729 GI:166586 from
(Arabidopsis thaliana)
Length = 190
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 140 QIEVFLPILNQWFQQCAGIVL 202
Q ++ P+ WFQ+ AG+VL
Sbjct: 73 QCYMWFPLWKHWFQEIAGLVL 93
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,023,798
Number of Sequences: 28952
Number of extensions: 159561
Number of successful extensions: 395
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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